Detail information of AfisC5G05514
| Gene | Chr | Start | End | Strand |
|---|
| AfisC5G05514 | chr5 | 1014139660 | 1014150152 | + |
| Database | accession number | e-value | annotation |
|---|
| nr | XP_009411861.1 | 6.7e-51 | PREDICTED: formin-like protein 18 |
| Swissprot | Q08747.1 | 4.2e-10 | Upstream activation factor 30 KDa subunit |
| trEMBL | A0A804HTE4 | 4.8e-51 | Upstream activation factor subunit spp27 |
| TAIR id | % identity | e-value | bit
score | gene aliases | Short description |
|---|
| AT4G22360.1 | 50.00 | 3e-32 | 136 | | SWIB complex BAF60b domain-containing protein |
>>>Show top 3 blast result 
| Query id | Subject id | alignment
length | mis
matches | gap openings | query
start | query
end | subject
start | subject
end | % identity | e-value | bit
score |
|---|
| AfisC5G05514 | AT4G22360.1 | 142 | 68 | 1 | 167 | 308 | 183 | 321 | 50.00 | 3e-32 | 136 |
| AfisC5G05514 | AT4G22360.1 | 86 | 51 | 0 | 373 | 458 | 300 | 385 | 40.70 | 1e-13 | 74.7 |
| AfisC5G05514 | AT1G49520.1 | 103 | 53 | 1 | 161 | 262 | 81 | 183 | 47.57 | 1e-23 | 107 |
| Pfam ID | Pfam name | type | alignment_start | alignment_end | bit_score | Evalue |
|---|
| PF08766.8 | DEK_C | Domain | 4 | 62 | 29.4 | 5e-07 |
| PF02201.15 | SWIB | Domain | 185 | 255 | 91.0 | 2.9e-26 |
| PF02201.15 | SWIB | Domain | 380 | 454 | 59.4 | 2.2e-16 |
| Accession | Ontology | Name |
|---|
| GO:0000500 | C | RNA polymerase I upstream activating factor complex
|
| GO:0001165 | F | RNA polymerase I upstream control element sequence-specific DNA binding
|
| GO:0001168 | F | transcription factor activity, RNA polymerase I upstream control element sequence-specific binding
|
| GO:0005737 | C | cytoplasm
|
| GO:0006325 | P | chromatin organization
|
| GO:0042790 | P | transcription of nuclear large rRNA transcript from RNA polymerase I promoter
|
| KO | Name | Enzyme ID | Pathway | Pathway ID |
|---|
| K15223 | UAF30, SPP27; upstream activation factor subunit UAF30 | EC:- | - | - |