result

Gene information

Detail information of AfisC5G05588

Location

Gene	Chr	Start	End	Strand
AfisC5G05588	chr5	1034863043	1034864950	+

Sequences

CDS

Protein

Gene

>AfisC5G05588
ATGGAAATGGGTTCGACCTCATTGGACTTCTGTAAGAAAACGTGCTTAAAAAACGGCGGTAAAAAGCAAGCGCCGCGATGCTGCCAGGTGGAAGGATGCAGCGTGGACTTGAGCGGAGCAAAAGCTTACTACGGAAGACACAGAGTTTGCGGGACCCACTCGAAAACCGCCATGGTTATCGTTGGCGGTATGCAGCAGAGATTCTGCCAGCAGTGTAGCAGGTGATGCTATTACTGTACATATCTTGTTTGATGAAATGCTTGTGCTCAACTTTTTGCTCAAGTACTCCATCTTCATGCTGTTTTTGTTATTGTTTCATGAAACAATTGTAGCAGGTGATGTTTTTGTTGCACATAACTTGTTTGATGGAATGTTTATGTTGAAGTTTTTGCTTAAAAGTTTGATCTTTGTGTTTTCTTTTCTTTTTTTTTTGTTGTTTGATGACATGTTTTTGCGATTTTGTTTGGTTTAGGGGATAGGTGCGAGGAAAGAACTTGACATTGATTGAGTAGGTTTTGAACTAGATAATTTATAAACTGAGCTTTCAGTAACCCACTTCTGTCTAGAGAAAGTAAAATTTTATCTTAGTCATTCCAAGTGGCAATATGCAAGGAAAAGTTCGATGAAAAGTGAGAGAAAGTTTGAATATTTGTTACAAGAACACATAAGTTGGGCGCGTTCTCATTCATTCTAGTTGGGCGATGCAAACTATGAGACTGTGTTATTTGCATTAGGAGATTAAGAGAATAGGAGGCAAATAATCATTTGATGACAAATTCTATTCATACATGGTAAATTGCTTTGCCTACACCATTAAAATTTAATAAAATTTTAGACAAAAATGCCCTTGTTATATAATAAAATTAAATTCAATATTAAATAATAAAAAATTCATAATATATTCAACATGGTTTCTTTCATAAAGTTACTGAAATTTTCATGCATCATCAATTGAATTAAATATAAGTTCCTTTTAGGTATCGGTTTTTATTCATAGAGTTTCAAGATGTATTCATGCATGGTTAATTTTAACATTTTTCACTTTAAATTAAATATAAAAGTTGAAATTTAATTCAAAACTAAAATTAACATAATTCATAAAATAGTAAAATTTTCTTTCTCTTACTTAAATTAATTGAAGTTTAAATTTAGCATCAAAATTTAAATAGTTTAACTTGGTAGTATTTAAAAATTAAACTCAAATTGCAATCATATACATATGTTTTAGTTGAAAATTGTGAAAACCAAATTCCAATTGAATGTTTCAAAATATAAGATATTATATTATTTTCACAACACATAAGATGCATGTGTATGTTTAAATTTGGGTACTAACCAAATATTGATTCAGATTTCACAAACTTGCCGAATTTGATCAAGGGAAACGCAGCTGCCGTAGACGCCTTGCCGGTCACAATGAGCGTAGAAGGAAACCACCAGTTTCTGCTTCTCTATCGTCTCTCTTTCCTGGTTCGACCTTCTTATTACATTATCTCCTTTTTCTTACTGAAGAGCGAAGTCATGCCAGTGATGCAAATTCATTGCTATGGATCTATACAGTGGTCCTTTTACTGAAATATCAATGCATATGACAATGTATAAATGATCATTCGGTCTTCGATCTGATTGATCTTTTTGTCTACAGATAACGGAAGACTGGATGGCTTTTTGATGAATTTCAAGTACCCAAATGAGCTATCACAGACGTTTCATCAGATCAGTGGCAAACAGTGGCAAGGTCGAGCTAATTTTTCCAACACACAAAGTGCTGCCTCTCTTCTGTCATTTAACATTGATAACGTTAACACTGCCTCCTCCAACCATAGCTTTGTTTCTTATGGATTTGATCAACCAACTAATGAAGCAAAGCTGGATGCTGTAGAGAAGCAACAAAACACTGTAATCTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020250758.1	2.2e-38	squamosa promoter-binding-like protein 17
Swissprot	A3C057.2	1.5e-31	Squamosa promoter-binding-like protein 17
trEMBL	A0A1R3L5F4	1.6e-38	SBP-type domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G42200.1	71.28	8e-33	136	AtSPL9;SPL9	squamosa promoter binding protein-like 9

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC5G05588	AT2G42200.1	94	25	2	25	118	72	163	71.28	8e-33	136
AfisC5G05588	AT1G69170.1	75	17	0	28	102	124	198	77.33	2e-31	132
AfisC5G05588	AT3G57920.1	86	26	1	28	112	59	144	68.60	1e-30	129

Ortholog group

Species	Genes
Allium cepa	g466635.t1
Allium fistulosum	AfisC5G05588
Allium sativum	Asa6G05502.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03110.11	SBP	Domain	28	101	113.3	4.2e-33

Gene Ontology

Accession	Ontology	Name
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0046872	F	metal ion binding
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0006355	P	regulation of transcription, DNA-templated
GO:0008361	P	regulation of cell size
GO:0010228	P	vegetative to reproductive phase transition of meristem
GO:0010321	P	regulation of vegetative phase change
GO:0042127	P	regulation of cell proliferation
GO:0048653	P	anther development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network