result

Gene information

Detail information of AfisC5G05632

Location

Gene	Chr	Start	End	Strand
AfisC5G05632	chr5	1042031937	1042033093	-

Sequences

CDS

Protein

Gene

>AfisC5G05632
ACCACTTTCATCTCCACCCGCTCTTCAAATCAAAAATATCAATGAGTACGGATCGGATTAAAGGACCTTGGAGTCCGGAAGAGGATGACGCGCTTAGAGATCTCGTCAAAGTCCACGGCGCTCGCAACTGGTCCACGATCGCAAAATCTATCCCAGGCAGATCCGGCAAGTCCTGCCGCCTCCGCTGGTGTAATCAGCTGTCGCCGCAGGTGGAGCACCGCGCGTTCACAGAAGAGGAAGATCGGAACATCATCTACCTGCACGAGAAGTACGGCAATAGATGGGCCACCATCGCTCGTATGTTACCGGGTCGTACCGATAACGCGATCAAGAACCATTGGAACTCGACGCTGAAGCGGAAGTTCCCTGGCGGCGTCGAACTTCTGGATAGAAATAGCGGATTCGTTTTGGATCCTGGGTCGGTTTCAAATAAGCGTAGATCTGTTAGCCCGGGAACAGCATCGGAGTCAGATCTATCGGAATCTAGTCACGGTCGACAGATTCAGATCTTCAGACCAATTGCAGTGGCCGGATCGGTCGATGTTGAAGCGACGCACCCTCCAACTCAGCCCCAGGTACCATCTCCGCCGCCAGAGACTGAGGTGGAGGATACGTTCACTGCTTTGACTCTTTGCACCCCCGGAAGCAGTTGCAAGGATCCATCAAATAGTCCGTCGTCGTTGTCAAATCCACAGGCGACGACTCTGAAGCCGCCGTTTGATGAAGAGTTTTTGGGGATGATGCAGGATATGATTAGAAAGGAGGTAGCAGTTTACATGAGCAGATTGGAAAAGAGCGGCGGGTTTGTTAATTTTAGTACAGTGAATGCGGATTTGAAGAACGTTTGTTTGAAGCGGATAGGAATGTCAAATATCGAGTAGAACTTTGAATATCAAGTTTTGCCATTAGCTTGATTTTTTCTTCTTCTTTAATTTAGCTTCTTTATCGTTTTCCTtTTTTTTAGCAGTCAAATATTTCTTTTTTTTGTACAGTTAATAATTCGAAAATGTTCGAATTTATCAATGGAAAAAATTATTGAGGAACTTGATTGGATTTGTTGTTTTTTTTTTCGGTTTTTTTTCACTGATATTATTTATTTAAGCGGTCAGTCCTTATAATTTGATGTACGATTTAAGCTCAAAAGCAGTCCATTTTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_028080167.1	3.3e-61	transcription factor MYB44-like
Swissprot	O23160.1	6.3e-49	Myb-related protein 73
trEMBL	A0A4V3WMQ2	2.4e-61	Transcription factor MYB44-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G37260.1	43.70	7e-52	200	ATMYB73;MYB73	myb domain protein 73

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC5G05632	AT4G37260.1	270	129	6	4	251	10	278	43.70	7e-52	200
AfisC5G05632	AT3G50060.1	292	111	9	4	256	3	277	42.81	2e-50	195
AfisC5G05632	AT5G67300.1	317	137	8	3	279	2	305	40.06	2e-48	189

Ortholog group

Species	Genes
Allium cepa	g320611.t1
Allium fistulosum	AfisC5G05632
Allium sativum	Asa6G05533.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	7	52	67.1	9.6e-19
PF00249.28	Myb_DNA-binding	Domain	61	103	55.6	3.8e-15

Gene Ontology

Accession	Ontology	Name
GO:0000122	P	negative regulation of transcription from RNA polymerase II promoter
GO:0005515	F	protein binding
GO:0000978	F	RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077	F	transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0051726	P	regulation of cell cycle
GO:0005654	C	nucleoplasm
GO:0006338	P	chromatin remodeling
GO:0009555	P	pollen development
GO:0009628	P	response to abiotic stimulus
GO:0009723	P	response to ethylene
GO:0009737	P	response to abscisic acid
GO:0009751	P	response to salicylic acid
GO:0009753	P	response to jasmonic acid
GO:0009755	P	hormone-mediated signaling pathway
GO:0009966	P	regulation of signal transduction
GO:0010199	P	organ boundary specification between lateral organs and the meristem
GO:0010200	P	response to chitin
GO:0016363	C	nuclear matrix
GO:0019760	P	glucosinolate metabolic process
GO:0046686	P	response to cadmium ion
GO:0031523	C	Myb complex
GO:0043525	P	positive regulation of neuron apoptotic process
GO:0045624	P	positive regulation of T-helper cell differentiation
GO:0045944	P	positive regulation of transcription from RNA polymerase II promoter
GO:0048527	P	lateral root development
GO:0051571	P	positive regulation of histone H3-K4 methylation
GO:0051574	P	positive regulation of histone H3-K9 methylation
GO:0071229	P	cellular response to acid chemical
GO:0090307	P	mitotic spindle assembly
GO:0098542	P	defense response to other organism
GO:1901701	P	cellular response to oxygen-containing compound
GO:2000652	P	regulation of secondary cell wall biogenesis

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09422	MYBP; transcription factor MYB, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network