result

Gene information

Detail information of AfisC5G05647

Location

Gene	Chr	Start	End	Strand
AfisC5G05647	chr5	1046039665	1046042310	+

Sequences

CDS

Protein

Gene

>AfisC5G05647
ATGGGGAACTGTGTGCAGGGGAAGCCGTCCCAAACATCCCCACCACATCATCAACATCAGTACGGAGTGGGAATTGAGAAGATGAAGGTGGACCGTGGATACTACGCCAGTGGAGGATCAAACGGACATGAAAAGGAGAAATTAATGGAGGAGGAGGAGGAGGTGATAGCAATGGAGGAAGGCGGGAGGAAGATGGAGGAGGAGTTGGTGGACGGATGGCCGAGGTGGTTGGTTAGCAATGTGCCCAAAGGTGTTCTTGTCGGCTTGGTTCCTAAAAGCGCTGAATCTTACTCTATGATTGGCAAGGTTTATCCATTTATCTATATGTTTAAAGTGTGTTTGACTAATATTTTCAACATAATACATATAATTCATTTGATAGATAGAAGTCCACTTTACATCAACTAAACAAGCTCAATATTGTTTTCAACATACAAAAAATGCAGGTGGGTTCAGGCACATACAGCAACGTGTATAAAGCAAGGGACAAAGACACAGGAAAACTAGTCGCCCTAAAGAAGGTCCGGTTCGACACATCCGAGTCCGAAAGCGTTCGATTCATGGCTCGAGAAATCTCCATCCTCCAAAAGCTCGACCACCCAAACGTTCTAAAGCTCGAAGGCCTTGCAACATCACGTATGCAGTACAGTCTTTACTTAGTCTTCGAGTTCATGACAACTGACCTGGCTAGAATCATATCAAGACCCAACGCGACTCTGACCGAACCTCAGGTCAAGTTCTACATGCATCAACTGATCTCCGGGTTGCAGCACTGCCATGAACGAGGGATCCTGCACCGCGATATAAAGGGATCGAATTTGCTGATCGATAGGAACGGAATGCTTAAGATTGGAGATTTCGGACTGGCGAATGAGTTCGATCCGGAGAAGAAAAGACCCCTCACTAGTAGGGTTGTAACATTGTGGTATAGGGCTCCCGAGCTGTTGTTAGGGTCAACGGATTACGGGGTTGGAATTGATTTGTGGAGCGCGGGTTGTTTATTGGCTGAAATGTTCACTGGACGCCCCATTATGCCTGGTAGAACTGAGGCACGTTCATTCTTATTTAGCATTCAAATAAATCCAACAATTTCCCTTTATGTGTATCAGATATTCTAATGTTTTGACCATATAAGCAAACCTTTTGAAATATGACAAAGAAATGATTGTAGTTTTTACGTGTAGGTGGAACAACTACATAGGATATTTAAACTATGTGGATCTCCGTCAGAGGACTATTGGAGAAAATTAGGCCTTTCCACCAATTTTCGACTTCCGACACCATACAAACCAAGCATCTATGAGACTTTTAGAGATTTACCTCCTTCCTCTTTGGGTCTACTTGTCACACTTCTTCAACTCTACCCTTATAATCGTGGCTCTGCGGCTTCTGCTTTGCAAAATCCGGTAACATATTTATTCAAATGACCTAAGAAGTTAATACTACGCTTTTTGATTGAGTGAAATTTCTTTGTAACCATTCTGTCATTTCCTCATTGTGTCTGTATAATCTCAGTATCATGTGCTCCCGTTATATTTTCAACCAATAGTATCTAATCAATCGAGTTAAAAACATATAATTTTCTTTTATAAACCAACAGTTAAGGTTAAGTAGAAATATGAAAACAGCTATAACAAATGACAAGTAATGCTGCTCTAAGCGGAGCAGTAAAAACTTGTAATGTAAGATAGATTTACAGTGAAAAAATCACTGTTCCAGGTATAGTATGAAGTCTTTTGGCATGTTAAGACAGTAGTAAAATAGCTGAAACTGATGGCTAAACGTAATGAAATAACTATAACCAACTCTGAACGCAGTTCTTCAGTACATTACCACTGGCCTGTGGTCTTTCAGAACTTCCAGTAGTTCATCAGAAAGAAGAAGAAGAAGATGATCCAGTTCAACAACGCGAACGCAGAAAGTAAAACTTCGCAATTCTTCAGTTTAACTGTTTATTTCATATCATTTGCATTGACTGACATCTACACGTACAGGCGCAGAAGCTCGAAAGCGAAGCAGCGTTCTAAATCCCAAAAAGAGACCACAGTAAAGTTCGCAAATGACATGAATAAACCAGAACCAAAGCACTCTTCTTCAAAAGAGGTAAACTCAACGGTTTTTTAATATTCAAATAAACCGAATATTGTTTGTAAATCGATCCTCTATTCATAGGAAACAAAACAAAGAAAGTATAACCAAGAATCAGGAAGCACCAGCGCTGGAAGCACAAACCCAGAGATGTATCCTGAAAACTCACCCCCATTGATAAATTCCACCCTTACTTCTAAACCTACACCAAGAACACAGTACCATCCTGCTTCTTCTAGAAACATCATGAACCCCCATTTGCCACCTCGCCCTGCTTCTAGAATTTCGTACGCTGATATTGATGCGAAACAAGATATTAATTTGTTGAATTTGAGAGGTTTGGAGAAGAGGTCTGCTTCAATGTCCGATGCTAATAGAGTTGCAAGGGAGCAGCTGCCTAAGCATTACGGTGTTGACTGAGAGGGAGGATATCGATCTGTAATTTGTTTTGTATGGTGAGTTGTATGTTGATTATTTTTAATTTAGTTTTAGTACAATGATTATCAAATTTATTACATGAATCAAATTGTTGTTTTTGTTCCCATGGCTTTGTTCTCG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020265589.1	3.1e-159	probable serine/threonine-protein kinase At1g54610
Swissprot	Q9ZVM9.1	2.2e-117	Probable serine/threonine-protein kinase At1g54610
trEMBL	A0A5P1EWP8	2.2e-159	Protein kinase domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G54610.1	60.85	4e-125	445		Protein kinase superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC5G05647	AT1G54610.2	355	136	2	67	419	89	442	60.85	4e-125	445
AfisC5G05647	AT1G54610.3	355	136	2	67	419	89	442	60.85	4e-125	445
AfisC5G05647	AT1G54610.1	355	136	2	67	419	89	442	60.85	4e-125	445

Ortholog group

Species	Genes
Allium cepa
Allium fistulosum	AfisC5G05647
Allium sativum	Asa6G05545.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	97	379	231.9	7.3e-69

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0000166	F	nucleotide binding
GO:0000307	C	cyclin-dependent protein kinase holoenzyme complex
GO:0009615	P	response to virus
GO:0005829	C	cytosol
GO:0004693	F	cyclin-dependent protein serine/threonine kinase activity
GO:0005694	C	chromosome
GO:0005768	C	endosome
GO:0005815	C	microtubule organizing center
GO:0007099	P	centriole replication
GO:0007265	P	Ras protein signal transduction
GO:0008284	P	positive regulation of cell proliferation
GO:0008356	P	asymmetric cell division
GO:0009409	P	response to cold
GO:0009555	P	pollen development
GO:0009574	C	preprophase band
GO:0009793	P	embryo development ending in seed dormancy
GO:0010005	C	cortical microtubule, transverse to long axis
GO:0010033	P	response to organic substance
GO:0010035	P	response to inorganic substance
GO:0010235	P	guard mother cell cytokinesis
GO:0010444	P	guard mother cell differentiation
GO:0015030	C	Cajal body
GO:0018105	P	peptidyl-serine phosphorylation
GO:0030332	F	cyclin binding
GO:0031571	P	mitotic G1 DNA damage checkpoint
GO:0035173	F	histone kinase activity
GO:0040020	P	regulation of meiotic nuclear division
GO:0042023	P	DNA endoreduplication
GO:0043167	F	ion binding
GO:0045023	P	G0 to G1 transition
GO:0048366	P	leaf development
GO:0051439	P	regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
GO:0060968	P	regulation of gene silencing
GO:0072331	P	signal transduction by p53 class mediator
GO:0090068	P	positive regulation of cell cycle process
GO:0098725	P	symmetric cell division
GO:1901699	P	cellular response to nitrogen compound
GO:1901701	P	cellular response to oxygen-containing compound

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K08819	CDK12_13; cyclin-dependent kinase 12/13	EC:2.7.11.22 2.7.11.23	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network