result

Gene information

Detail information of AfisC5G05805

Location

Gene	Chr	Start	End	Strand
AfisC5G05805	chr5	1069994639	1069998840	+

Sequences

CDS

Protein

Gene

>AfisC5G05805
ATGGAGAATGGGATTCAGAGATTCCAATTGGATCGAAGTAAAGTCAGGATCCTGCTCTGTGATAATGATGCAAAAAGTTCACAGGAGGTTGTGAACCTGCTTTCTAATTGTGATTATCAAGGTATTTTAGATCTGGTTGATTTTATTTTATTTTTTTCTTTCTGTTTTGAGGTGCGTTTTATTAGGGGTTTAAATTGTTTGTTTGGACTGCTCCTGTAAAAGCAATTTGGATGGGTATATTGACTATTACTAATTACAGTAGATTCCTTTTTTTAGTGATACTAGTTACTTCACCACGTTTACTTGGTATTTGATCTAGTAGTAAAACTGACACCGCAAATCATATCCACTGCTTTACTTCTTTACCTTCATCTTTGTTATAAATAAATAAATAAATAGAACAGAGTTAGCCTATGTTATAATTTATAAACGAACGTGTGAATGAATTGCTAGATGGTCGTTAAATAGAGAGAGCGATAAGTAGAGTGGGAGGATATTGTGTAGAGAGCGGGTTTGATAAGTTGCGGGGATGTAGGGAAAATTGTGTACCCTTATCATGCATGTGGCTATAGTATTTTTATTGATAAGGACAAGTTATTCCATCTTGTGGATAATAACAAGTTTTACTTTAGTTCAACAGTTACTGAAGAACCTGTATTGGGTTTTGAAGTAAAAATCTATATCGGTGAACTATGGGTTGCAGAAGAAAATGAGAGAATGATGGAGTAGGGAGAAGTGAGGTAAGAAAAGAGTGAAGGGAGTTCAGTTGCTGTTATGGAGAATTTGTGTTTGTGGTTATGCTAGTAGAAATAAAGAAGGCTTTTGAACTTTACGAGTGTGGCTATTGTTTAATATTTTGTAACAGTCATATCATTTGCAGTTCAAATTGATGCTATTGCATCAACTTATCTGCAATTTCAAGACTATTATCTTGTATGATCTTGTATCCAATACATTAATAGCTTTTATGTTATTGACGTTGTGGTCTTTAAAGTTTGTGGAAAGACCAAGGGTTGTGCTTTTTCCCCTGTAGAATTATGAAGTTTTTGAAAAATTGAAGATATGTATAGTTTAAGCGCTATGTTTTTTCTGTGATATCCAATGACCAAAAATTTGAAGTTAGCATGCAAAATATATTGCTGTAGGCTAAAAATGTTAAAATTATGTAAATTTCTGGGAGCATATACTATATATACATATAGTATGTAACTATGCATGTATGAGTATGATATTAGTAAACTCAGGACCAATTGTTGTAATATGTCCTCACGGTATTAATTTATGTGTACCAATTTTTTAATTTGGAGATGGAATGTAGCACAACACACTTAAAGCAGTTGATGCTCTAACTTAACTATGTATTAGATAACCATCTTCATCACATGAATCAACAGCATGAGCTTTTGTTATTCAAGAAGCATCAAATTTTGTTTGAAAACGTGTATTATTATTTGTATGAGAAGGGAGCAAAATTAATTTTGGCGGAAATTAGAGGAACTACTAATATAATTAGAGGAGGATTATGTTAAAGGAGATCTTAAATTCGATATACCTTGCCGCGAAGAAAATGTATATTTTGTATGCAGTGTGATATCTTATGTTGAAAGAAGGAAACACTAACATCTCCCCTACTGTATCTTCACTACTCATTAGTATCCTTAACAAATGTCTCCTTATTCAAATCTATAATTCTGTTAACAATCCCTTCAAGTATAATTTCTTAATGGGACTGAACTGCATCACATTTTTCTTTCAGGCACTGTTGGTATGCGATTCCTTAAGGTCAAAAGCCCATTTAAAACATTGTCAGTGTCATGGTTAGAGCATTAAAATTTCCTATTCTAGGTGTTTTGTTTTGGCATTTGCCTTTTTACATACCCAAAATTTGTAAAAAGAACCCTAAAATAAATAAAATACGAGACAGCATTAAAAAAAAAGTTAAAGAAGGAACAGTTGCATGAGTTGAGACTTGAGTATCTGTATGGTTTTACTTTGCCCTCAAAGAAGCTTCAAGAAATTGGCCATAAGCTTAAATAATAGTTTCTGATATCATTTTTGATACGCCGCACTCCCAACAACAACAATATGATGTAAACTTAAATTCTGTTCTAAATGCACTAATCAAAGTGTTAATTTTTGTTATTACAACAACAGACCAATTCCATCTTAAAAGTATATGCTATTTTCTGAAGCATATTTTCAAAATTTATGGTCAAACTTATTTGTTATTGTGATGTCAAACTGACATTATTTCTCTGATTACGGCTTAAAATCCTTGGTTAACACTTATAGTGATGATGACCCTTCAAGTTCTAGCATACCGAAAATTCTTGTGTACTAAGCCTTTTTTTTAATGTCAATATTTCATTATATGCGAAAGCTGCATTAAAGTAATCATTGTTTGTGAATATGACCTTTCTAACCCCTTTAGGATATACCTTAAAACAAACAAACAATTGGTTTTAGTTCAGTTTATATTTTTTTATTATCGGACCAATCGGACCAATCAAATACTCACCTCTAGCCACATGTTTATATTTAAATATTTGATCCATATGATAGGAGCGAGAAAGAACAAATATTTAAATAGAATCTTGTGGCTGATATCCGAAGCTACGAAATGGTGCTAATTAAAGAAGGCTATTCATCCTAGCTCTCTCTCTCTGTTTATGTGTGTGTGTGTGTATATGTACGTGGTATGTGTACGTACACACATGTGTGCGCACGCGCGTGCGAAGTATCGGCAGTTTCCTCTATTCAGCTTCTAAACGTAGCCCCTTAATTTTAGCCATTTGTTCCTATTTAAATAATAATATTTTCTCTCTCTTATCACGTCATACAATTAATTAAATCGAAACGAGTTGTTGAAATTAAGGGGCTATATGGGGTTGAATAGAGGGGGCTGCCGATCCTTCCTTATATTCATATACAAACACACATATATGATTAGTTACACCTCATTTTTGTCATACCTCAAATCCCCCCATTTCAACCAAGTTCCGAATTAAATAATATATTTTCTCTCTCCTGAAGTGAGAATGGAGAGAAGTTATATTATTTAATTCGGAGTATGTGATTGAAATCAGGGGGATTCGAGGTGTAGCCGATCCTTGCCCCATATATATATATATATATATATATATATATATATATATATATATATATATATATCACCCTCTCCATTTTCATTTTCAGCCCTTTTGTACTCCTTCATGTTGTCCATTGAATTTAATAAAGTAATGTATAGATTGGATGATGATGATGTAAGAGAGTGTTGACTATTCCATCAAATCCATCCATTGATTCATGAAATCCAATGGCCAATATAGATGGGCTACAAAGGAGCGAAAAATGGAGGGGTCATGGAATTCACACACACAGCACACTAAATTCATATTCACAAACTTTCATTTTGTCAATTTGCCATCTTAGTAACTTCTGTGAGAACTGCAAGACAAGTAATTGATGTACTCAGTGCTAACGGACCTGATATCGATATAATTCTTGCTGAAATTGACCTTCCTGCAACTAAAGGTTTTAAGATGCTGCAGTATATAAATAGAAACAAGGAACTGAGGCACATTCCTATCATAAGTAAGTATTTTGCATTTTAAACTGTTTGTTCCACCTTTATGAGCCCTCTATTGCATGCATATAAGCACAACACTATACACTACTGGATTTTTTTGTGGTGTTGTCATTTTGTGTAATTTTTTAACATGTGGGCTTATTGGTATTAATTAGTGATGTCTTCTCAAGATGAGGTTTCAGTTGTTTTCAAGTGCTTGCGTCTCGGAGCAGCTGACTATCTTGTCAAGCCATTACGGAGAAATGAATTACTCAACTTATGGACCCACATGTGGCGTAGAAGACGCATGGTTCTGTCCATTTTGTAAATCTTTGATTTATACGTTCTCTTTAATTTGATTTTTTTTATTTAAAAAAGTGTATATCAAGTAGAACCGCTTTATTTTATTTTTTGTTGCTGGCAGCAAGGATTGGCAGAAAGGGAAATTATTAGTCATGACTGTGAGATGACTTTATCAGAACCTAGTGATGTCCGCACAAATAGCACATTTGCATTCTCTGATGATACAGAAGTTAGACCTGGTGAGGGACTTCAACAGGATTTGAATTATCCAGAGCATCAAGAAAACGAGGTTATATTCAGTCACATTGGTTCAACTTTGGTTAACTTTTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020258056.1	1.7e-78	two-component response regulator-like PRR1 isoform X2
Swissprot	Q9LKL2.1	1.1e-63	Timing of CAB expression 1
trEMBL	A0A5P1FD77	1.2e-78	Two-component response regulator-like APRR1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G61380.1	66.67	2e-67	251	APRR1;AtTOC1;PRR1;TOC1	CCT motif -containing response regulator protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC5G05805	AT5G61380.1	186	62	0	10	195	14	199	66.67	2e-67	251
AfisC5G05805	AT2G46790.1	127	71	0	10	136	32	158	44.09	1e-29	126
AfisC5G05805	AT5G24470.1	132	72	1	6	137	151	281	44.70	1e-29	126

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00072.21	Response_reg	Domain	17	128	70.3	1.3e-19

Gene Ontology

Accession	Ontology	Name
GO:0000156	F	phosphorelay response regulator activity
GO:0005515	F	protein binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005739	C	mitochondrion
GO:0005634	C	nucleus
GO:0009266	P	response to temperature stimulus
GO:0009414	P	response to water deprivation
GO:0010017	P	red or far-red light signaling pathway
GO:0010031	P	circumnutation
GO:0010082	P	regulation of root meristem growth
GO:0010380	P	regulation of chlorophyll biosynthetic process
GO:0044212	F	transcription regulatory region DNA binding
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0031537	P	regulation of anthocyanin metabolic process
GO:0032091	P	negative regulation of protein binding
GO:0042752	P	regulation of circadian rhythm
GO:0048367	P	shoot system development
GO:0080022	P	primary root development
GO:0080036	P	regulation of cytokinin-activated signaling pathway
GO:0080113	P	regulation of seed growth

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K12127	TOC1, APRR1; pseudo-response regulator 1	EC:-	Circadian rhythm - plant	ko04712

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network