result

Gene information

Detail information of AfisC5G05867

Location

Gene	Chr	Start	End	Strand
AfisC5G05867	chr5	1079948718	1079950527	+

Sequences

CDS

Protein

Gene

>AfisC5G05867
CTTGGTTTCAATAAGTAATTTCTTTAATTAGACAGAAAATATGTTAGTTTATCGTACTTTTAGATAAGCATTGATATTCGTACTTTGGCTCGAATTCTCGATTCTATTTGCATTTGCATAAATTTATGATTATATTTTGTTCCTCTGCTTTTTGTTATATAATTTGATCGAAGATTAATATCTTCTGCTGTAAAACAGATGGACCGAGAAATGCAGCACTCATTTTTTCACCCACTCATCACTCCGCAGTACAGCCCCGAATACTCAATCTTCTCTCCCAAAAAATTAGCCCCGATTTCCCCATTTTCCCCTGCCTCATCCGTCAGCACCCCATCGGACGACTACTTCTCTGCCACCTCAGATCGCCTTTATCTTGCTGGACTCCGCCTGCAACATCAGGATTTCTCCAACCGTTATGATCTCTGCCTTTCCCATCTCCAAGATGCTGCCAGGCAGGCTGAGCTTCTCCGCCTTGAGAATGCACAGTTAAGGATCCGAAATGGACAGCTTAGCAAGAGGATCAGTAATGGAAGTGGGATTGCAAGAATTGAGTCCTTGGAAAATGAGATGAGGAAGCTGAGGATTCAGAGGGAGAAGGTAATGGAGATGTTGCCTCCTGCCACTGCAAATAGTTTGCCAAAGAGTATTGCCGTTAGATCAAATGGATATAAGAATATGAAAGGTGGCAGCGGTAGTGGATCCAGTCGGGATGGGAAGGTGCGGGTTTCCAAACCCATTACTCTTGGATCGGTGAGTTTCCATGTTTCGTTTTCTTGTTAAGATATTCTGGCATTATCTGTATTGGATTTCTTGAATCTCTAAATTAGTTTACTCGACTCAGTATAGCATGATATGATTATTGCTGGTCTTGATAATTGAGCATCAAGGCAACAATTCTTGATCAGCTTACTTGCTTTGGTTTAAGTGATTTGATTATAGAATTTTTGAATGTGTTTGGATTGAAACAAATGGATCGAGCGTTCTAACTTAATGAACAATGAAACCTGGCCTAATTTGAGCAAATATTGCCATCAGTACGACTGAATAAGTTCAATGGAATAACATGTGATTCGTTGTAAGAATAATTTCATACCATCATTATTTCAAATGTCAACAAGAATCTGTAGTTAACTAAAATTTTAGTTTGTAATTGTTTGGCTCGGTACATGTTTTGAAATTCTCGATTATCCGGATTAGTTCACTCAAATCCTTAACATGATTTGGTTTGTCTTGTTCTTGATAATTGAGCATTAAAGCTGCCAATGACTGAATCAGTTCAACAGATAACTTGTAATATTTTCATACTCTGATAGACATCAATCATATATTTTCCAATGATTAATATAATCTGTTGAAGTGTAAACATGAATCGGCCTTTGCGTTTAGCATTTTAGTCGATTAAAAGCCATCATACTCTGACAGTTTATGAATATAAATCCAATGGCAGCAGCAGCGTGTGTACGTGGCAGGTGGTAATGAAGAGCAGGAGCAGCCGCAGCAGCAGAAGCGGCAGCAGACAGCCCAAAGTTCAGAAGAAAGAGCCCTAGAATTGGAAGTGTACAACCAAGGAATGTTCAAGACAGAGCTATGCAATAAGTGGCAGGAGACAGGGGAGTGCCCTTATGGGGAGCACTGCCAGTTTGCTCACGGACTTGACGAGCTCCGCCCAGTGATCCGTCACCCACGCTACAAAACTGAGGTTTGCCGCATGGTTTTAGCTGGAGACAGATGTCTTTATGGACATCGCTGCCATTTCCGCCATGCCCTTACCCCTTCTGAAATGCTACTCATGCAGTCATCCAGGAAGTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_010924174.1	9.2e-41	zinc finger CCCH domain-containing protein 9
Swissprot	Q6L5G1.1	5.3e-41	Zinc finger CCCH domain-containing protein 39
trEMBL	A0A8B9ALN5	7.6e-45	zinc finger CCCH domain-containing protein 9-like isoform X2

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G68200.1	45.55	1e-52	203		Zinc finger C-x8-C-x5-C-x3-H type family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC5G05867	AT1G68200.1	281	101	8	54	298	30	294	45.55	1e-52	203
AfisC5G05867	AT1G68200.2	280	101	8	54	298	30	293	45.71	2e-52	202
AfisC5G05867	AT1G66810.1	271	98	4	51	299	74	305	41.33	1e-47	187

Ortholog group

Species	Genes
Allium cepa	g109152.t1
Allium fistulosum	AfisC5G05867
Allium sativum	Asa4G05598.1; Asa4G05603.1; Asa6G06565.1
Arabidopsis thaliana	AT1G68200.1; AT1G68200.2
Oryza sativa	LOC_Os01g45730.1; LOC_Os05g50080.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00642.21	zf-CCCH	Family	227	252	44.4	9.5e-12

Gene Ontology

Accession	Ontology	Name
GO:0000932	C	cytoplasmic mRNA processing body
GO:0001570	P	vasculogenesis
GO:0003342	P	proepicardium development
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005829	C	cytosol
GO:0005634	C	nucleus
GO:0007507	P	heart development
GO:0009611	P	response to wounding
GO:0010837	P	regulation of keratinocyte proliferation
GO:0014065	P	phosphatidylinositol 3-kinase signaling
GO:0021915	P	neural tube development
GO:0031086	P	nuclear-transcribed mRNA catabolic process, deadenylation-independent decay
GO:0031440	P	regulation of mRNA 3'-end processing
GO:0032869	P	cellular response to insulin stimulus
GO:0033077	P	T cell differentiation in thymus
GO:0035264	P	multicellular organism growth
GO:0035925	F	mRNA 3'-UTR AU-rich region binding
GO:0038066	P	p38MAPK cascade
GO:0043491	P	protein kinase B signaling
GO:0044344	P	cellular response to fibroblast growth factor stimulus
GO:0045577	P	regulation of B cell differentiation
GO:0045600	P	positive regulation of fat cell differentiation
GO:0045616	P	regulation of keratinocyte differentiation
GO:0045647	P	negative regulation of erythrocyte differentiation
GO:0045657	P	positive regulation of monocyte differentiation
GO:0045661	P	regulation of myoblast differentiation
GO:0048382	P	mesendoderm development
GO:0051028	P	mRNA transport
GO:0060710	P	chorio-allantoic fusion
GO:0060712	P	spongiotrophoblast layer development
GO:0061158	P	3'-UTR-mediated mRNA destabilization
GO:0070371	P	ERK1 and ERK2 cascade
GO:0071320	P	cellular response to cAMP
GO:0071356	P	cellular response to tumor necrosis factor
GO:0071364	P	cellular response to epidermal growth factor stimulus
GO:0071385	P	cellular response to glucocorticoid stimulus
GO:0071456	P	cellular response to hypoxia
GO:0071472	P	cellular response to salt stress
GO:0071560	P	cellular response to transforming growth factor beta stimulus
GO:0071889	F	14-3-3 protein binding
GO:0072091	P	regulation of stem cell proliferation
GO:0097403	P	cellular response to raffinose
GO:1900153	P	positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:1901991	P	negative regulation of mitotic cell cycle phase transition
GO:1902172	P	regulation of keratinocyte apoptotic process
GO:1904582	P	positive regulation of intracellular mRNA localization
GO:1904628	P	cellular response to phorbol 13-acetate 12-myristate

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network