result

Gene information

Detail information of AfisC5G05944

Location

Gene	Chr	Start	End	Strand
AfisC5G05944	chr5	1094104102	1094105874	-

Sequences

CDS

Protein

Gene

>AfisC5G05944
AGTGTTAGATGACAAGCATACTGACATAACACTATGATCTGATACAAAAGTGCCAGCACTATGACATATCCTATTACAATTCAAAAAACTATGACATGGAACAACAAAATTACATGCTCGCTACAAGCCCGCAAATTCCCAATGTATTAGCAAACTAGCAGGAGTCATACAAACTTTCGAATCAGCAGGAGTCATGCCATATTTCAAATAGACCAGCAAATTCCAGAGACCATATCAAACTTGGAAGAAAAAGTTTCTCGGCAGGTAAGAAAACACAATAGTAACGTAAATTAAATATACGGAAGGAGCTATTTCAATAGCCAAGGCACACCTCATTTTTGCATTAAACTGAAAAGCATGTGATTTCAATATGGATTATATTAACAACCGGACTTGAACCATAAATAAAATAAATACATCAGGTCCTACATCGCTAATTGTAACAACAATATACATGAAGATCTTTTTTTTTCCCCACATACTCAAGTGAAACGACAAGATACGCAGATATCTTCATAATTTTCCTACCATCTCTCCATCCAATGGTTGACCCCATAAATCAAAAATATCCGATCATATCCCAACCAAATAACAAAACTGCCACCCTCCGTTTTGCATTAAACTCCTTTTTCCTCTTCCCAACCCTTCTATATTACCCCTTAGCCCCTAACCTCACCTCACCTTCTTCGCCTAACCCATACAGAACATTCGACCAAGGACATGACAACTCAAAAACCGTCTCGCCTCGGTAGCGACGAAAGCAGCATCGAAACCGAATACTCCACCAATAAAATTAATTACAGGAAACTCCCATCCTCCCAATACAAAGGCGTCGTCCCACAGCCCAACGGTCGCTGGGGTGCCCAAATCTACCAAAAGCACCAACGCGTCTGGCTCGGCACATTCGACCTCGAATCCGACGCCGCCCAAGCGTACGACGTCGCTGCCCAGCGCTTCCGTGGCCGCGACGCCGTCACCAACTTCAAACCCTTGTCGGACTCCTCCGACTCCGACGTCTCCGAGCTCGAGTTCCTCGACCTCCACTCCAAGTCCGACATCGTCGACATGCTGCGTAAGCATACCTACTGCGACGAGCTGCTGCATAGTAAAAGGAAGGCTTTCAAAAGTAAAACGAGCGCCGTTAAACATCATAACAGCTTTATCGGCTTGGTTCAGCGAGAGCATCTTTTCGAGAAAACCGTGACGCCTAGCGATGTTGGAAAGCTGAACAGGCTGGTGATCCCGAAGCAGCATGCCGAGAAGCATTTTCGGTATGATCATGATGGGGGCAGTAATGGAATTTTGATGAATTTCGAGGATGGAGATGGAAAAGCGTGGAGGTTCCGGTATTCGTACTGGAACAGTAGCCAGAGTTATGTGCTGACCAAAGGATGGAGCAGGTTTGTCAAGGAGAAGGGTCTGCAAGCAGGAGATGTAGTTTCTTTTGACAAGTTCTTGAACGGAGAAGAAGATCTAAACGAGAAGCGTTTGTTTATTGATTGCAAGCCAAGGAGCAAGCGGCTCCATGTTGTTAGGCTATTTGGTGTTAATATTAATCCTAATGTTGATGATTGGTCGATTAATTCCCGTGGAAAGAGTAGTGGTACTGGTAGAGTTGATTCGTAACGAAGAAGCAATACGCTACTTGTAGTATATTTTGTGTACTTTATTAGTTTTATAAGTTGCAAGTTACTACAGGTTTTTTTTTTTTTTTGGGTTAATGTATAGAGGATGAACTAAGTGTAATTTTGTTTACAAGGTATTGGAATAAGC

Functional annotation

Database	accession number	e-value	annotation
nr	XP_009400502.1	6.9e-89	PREDICTED: AP2/ERF and B3 domain-containing transcription repressor RAV2-like
Swissprot	Q8RZX9.1	1.0e-84	AP2/ERF and B3 domain-containing protein Os01g0693400
trEMBL	A0A804J2R3	5.0e-89	(wild Malaysian banana) hypothetical protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G25560.1	56.27	3e-85	311	AtTEM1;EDF1;TEM1	AP2/B3 transcription factor family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC5G05944	AT1G25560.1	311	106	9	2	292	38	338	56.27	3e-85	311
AfisC5G05944	AT1G13260.1	286	94	7	8	280	35	311	59.44	1e-83	306
AfisC5G05944	AT1G68840.2	285	93	8	8	278	37	311	58.95	7e-83	303

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00847.17	AP2	Domain	34	81	31.2	1.8e-07
PF02362.18	B3	Family	157	246	98.2	1.8e-28

Gene Ontology

Accession	Ontology	Name
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0009536	C	plastid
GO:0009741	P	response to brassinosteroid
GO:0009910	P	negative regulation of flower development
GO:0044212	F	transcription regulatory region DNA binding
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0019760	P	glucosinolate metabolic process
GO:0043565	F	sequence-specific DNA binding
GO:0048366	P	leaf development
GO:0048527	P	lateral root development
GO:0048573	P	photoperiodism, flowering
GO:0080113	P	regulation of seed growth

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09287	RAV; RAV-like factor	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network