result

Gene information

Detail information of AfisC5G06160

Location

Gene	Chr	Start	End	Strand
AfisC5G06160	chr5	1134434175	1134435645	-

Sequences

CDS

>AfisC5G06160
ATGGAAGCGTCCATGGTCAGCGGCGGCAGCGGAGGCGGAGGACCAGCTCCGTTTCTATTAAAAACATACGAGATGGTCGACGATTCGTCGACCGACGACATCGTCTCATGGAGCGACGCGAACAACAGCTTCGTAGTCTGGAACCCTCCCGAATTTGCCGCCAGGTTACTTCCTACTTATTTCAAGCACAATAATTTCTCCAGCTTCATCCGTCAGCTCAACACTTATGGTTTTCGCAAAATAGACCCTGAGCGGTGGGAATTCTCAAACGATGAGTTTGTAAAGAATCAGAAACATTTATTGAAAAACATACATCGTCGGAAACCAATCCATAGCCACAGTAATCCACCTAGCAGTGCGGGATTGGCTCAGTCTGGGTCACTAGATCCTGAGAGAATTGCATTGGAAGAAGAGATTGATAGGCTATCAAGAGAAAAGGCGACACTTGCGAATGATCTGTGGAGGTTTAAACAGCAGCAGTCTGGAACAAAAGCTCAACTGGATGATCTTGAGAGAAGATTGTTTGATATTGAACAAAGACAGGCAAAAATGATCGATTTTTTTGAGAAGGCAGTGTTGAATCCTAAGTTTGTTGATAATTTGATTAAGATTGCTGGATCTGGAGCTGCAGATTTCGTTAATTTGCATAAAAGGAGAAGGTTACCCGCTTTGGGTTTGGATTATTGCTTGGAAGCAGGAGACAATAGTAGTAATTTTTACGATAATAATGGCAGTAGTAGTAATACACCAAAACATGATGCTGGGCAAGTGTTTAATCAGGATTTTTCCGATAAACTGAAGCTCGGGCTGTGTCCTGCAGCAATTTCCGATGGTAATAACATCCTTGGTGCTACTAGTACTACATACAGCTCCAATGAAAGAGTTGAGCAGAGTAAAATAAATGGAGGAAAATTGGAGTTTCTTTCATTTGTACCAGATGCTTTAGAGCTTAAGGACACAGGGACTTCTGTTTGTCCTATGAAAAAGTGTTCTGAATCGATTGATGATGAGGATGAGATGATACTTTGTCAGTTAAATCTTACTCTTGCATCTTCACCCATACAAGTGGACAAGAATGGTACTGCAAGCAAGAGTAGAGGTTCTATGCCTGGAGAAAATGAAACAGGGAACAAAGAGGAGGGCAATGGTGATAGAGAAGTTTTGAAGAATCGAAGTGATGTCACTGCTAGTGATCTTAATGTAAAATCATCTGCTCATGCTGGAAGAGTGAATGATGTGTTCTGGGAGAAGTTCCTGACTGAAAGTCCAGGTCCTTCGGATACTGAAGATGTTACGATATCGGATCATGGTGATGAGCAAATAGAAGAAACAAAGAATGAGTCAAGCAGCATGCTGCAGAACAGAAAGGATATGGAGCAGCTGACACTGTAA

Protein

Gene

>AfisC5G06160
ATGGAAGCGTCCATGGTCAGCGGCGGCAGCGGAGGCGGAGGACCAGCTCCGTTTCTATTAAAAACATACGAGATGGTCGACGATTCGTCGACCGACGACATCGTCTCATGGAGCGACGCGAACAACAGCTTCGTAGTCTGGAACCCTCCCGAATTTGCCGCCAGGTTACTTCCTACTTATTTCAAGCACAATAATTTCTCCAGCTTCATCCGTCAGCTCAACACTTATGTACGACTACATACGTAAATCGATTCACTTCTATCGCTCTTGTTGTTGACTGATTCAATTATCTGTTTTGACAATTTAGGGTTTTCGCAAAATAGACCCTGAGCGGTGGGAATTCTCAAACGATGAGTTTGTAAAGAATCAGAAACATTTATTGAAAAACATACATCGTCGGAAACCAATCCATAGCCACAGTAATCCACCTAGCAGTGCGGGATTGGCTCAGTCTGGGTCACTAGATCCTGAGAGAATTGCATTGGAAGAAGAGATTGATAGGCTATCAAGAGAAAAGGCGACACTTGCGAATGATCTGTGGAGGTTTAAACAGCAGCAGTCTGGAACAAAAGCTCAACTGGATGATCTTGAGAGAAGATTGTTTGATATTGAACAAAGACAGGCAAAAATGATCGATTTTTTTGAGAAGGCAGTGTTGAATCCTAAGTTTGTTGATAATTTGATTAAGATTGCTGGATCTGGAGCTGCAGATTTCGTTAATTTGCATAAAAGGAGAAGGTTACCCGCTTTGGGTTTGGATTATTGCTTGGAAGCAGGAGACAATAGTAGTAATTTTTACGATAATAATGGCAGTAGTAGTAATACACCAAAACATGATGCTGGGCAAGTGTTTAATCAGGATTTTTCCGATAAACTGAAGCTCGGGCTGTGTCCTGCAGCAATTTCCGATGGTAATAACATCCTTGGTGCTACTAGTACTACATACAGCTCCAATGAAAGAGTTGAGCAGAGTAAAATAAATGGAGGAAAATTGGAGTTTCTTTCATTTGTACCAGATGCTTTAGAGCTTAAGGACACAGGGACTTCTGTTTGTCCTATGAAAAAGTGTTCTGAATCGATTGATGATGAGGATGAGATGATACTTTGTCAGTTAAATCTTACTCTTGCATCTTCACCCATACAAGTGGACAAGAATGGTACTGCAAGCAAGAGTAGAGGTTCTATGCCTGGAGAAAATGAAACAGGGAACAAAGAGGAGGGCAATGGTGATAGAGAAGTTTTGAAGAATCGAAGTGATGTCACTGCTAGTGATCTTAATGTAAAATCATCTGCTCATGCTGGAAGAGTGAATGATGTGTTCTGGGAGAAGTTCCTGACTGAAAGTCCAGGTCCTTCGGATACTGAAGATGTTACGATATCGGATCATGGTGATGAGCAAATAGAAGAAACAAAGAATGAGTCAAGCAGCATGCTGCAGAACAGAAAGGATATGGAGCAGCTGACACTGTAA

Functional annotation

Database	accession number	e-value	annotation
nr	QBC36003.1	5.7e-135	heat shock transcription factor A5
Swissprot	Q6K6S5.1	2.5e-103	Heat stress transcription factor 6
trEMBL	A0A411JIC1	4.1e-135	Heat shock transcription factor A5

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G13980.1	46.64	4e-96	348	AT-HSFA5;HSFA5	winged-helix DNA-binding transcription factor family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC5G06160	AT4G13980.1	476	191	15	18	463	24	466	46.64	4e-96	348
AfisC5G06160	AT1G32330.1	367	178	10	1	334	1	347	37.06	2e-56	217
AfisC5G06160	AT5G16820.2	474	254	15	17	462	27	468	33.76	4e-56	216

Ortholog group

Species	Genes
Allium cepa	g32164.t1
Allium fistulosum	AfisC5G06160
Allium sativum	Asa4G05278.1
Arabidopsis thaliana	AT4G13980.1
Oryza sativa	LOC_Os02g29340.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00447.14	HSF_DNA-bind	Family	18	107	107.8	3e-31

Gene Ontology

Accession	Ontology	Name
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005783	C	endoplasmic reticulum
GO:0005525	F	GTP binding
GO:0005634	C	nucleus
GO:0005768	C	endosome
GO:0005774	C	vacuolar membrane
GO:0030139	C	endocytic vesicle
GO:0007034	P	vacuolar transport
GO:0009644	P	response to high light intensity
GO:0009733	P	response to auxin
GO:0009958	P	positive gravitropism
GO:0010200	P	response to chitin
GO:0010286	P	heat acclimation
GO:0044212	F	transcription regulatory region DNA binding
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0034605	P	cellular response to heat
GO:0034620	P	cellular response to unfolded protein
GO:0042542	P	response to hydrogen peroxide
GO:0042803	F	protein homodimerization activity
GO:0048527	P	lateral root development
GO:0048530	P	fruit morphogenesis
GO:0071456	P	cellular response to hypoxia

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09419	HSFF; heat shock transcription factor, other eukaryote	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network