result

Gene information

Detail information of AfisC5G06175

Location

Gene	Chr	Start	End	Strand
AfisC5G06175	chr5	1137428631	1137429745	+

Sequences

CDS

Protein

Gene

>AfisC5G06175
ATGGTTCATAACCATTCATGCTGCAATAAACAGAAGATTCGAAGAGGCTTGTGGTCTCCTGAAGAAGATGAGAAGTTAACCAAGTACATTATGAAGCACGGCCATGGATGTTGGAGTTCTGTTCCTAAACAAGCAGGTGAATTCATACTTATTTATATGTATATTTCTTCTACTACATTTTGTATATTCTTTTAACATACAAAGATTACTTTTGAAGGATTACAACGATGTGGAAAGAGTTGCAGACTGAGATGGATCAATTACTTAAGACCCGACCTGAAAAGAGGAAGCTTTTCTGCTGAAGAGGAGTCACTTATTATCGAACTGCACAACATGCTAGGAAACAGGTTTCTTATTATTATTTTTTTAACTACATTTTGTTAAGAGTTACCGTTTAGTCATTTCTATGTTATAACGCAGAAAAACTAAAACTTGAATACAGATGGGCACAAATAGCAAAGCATTTACCTGGAAGAACAGACAACGAGGTTAAGAATTTTTGGAACTCGACCATCAAGAAGAAGCTCATCTTCTCACACGCTATAAACCATAGCCATGGCCTCAGTAATATTCTGCCTAGCAACCACCAACTAATAAATCCATCTCCTGCACAAGATGAACTTATCATTCCAATGATGAACACTTATACAAATCACATGGATTATGCAACTAATCATACTAGTATCATGAATAATGTACAGTGCATGGAGCCTTCTTATGGTTATAATGCTGGTTCAGACTTTATGGTCAGATATAATCAAGTAGATGATTTTCAACAATGTGCCACTCTTCCAAATTTGTCTTTGGTACATGGAAAAGGTACGGATTTAAACGTTACATGTCTCAACGATGCTGTTAGTTCTGAAGGTGCAAGTGCAGTAGATTACTACTATGTGGATGAATTCATGGCTAACGTCAAATTTGCTTGTAATTAGGATGTTGTTATTAGCTGAAAATATATATGAAAAAAGTGAGTGAGTTTAAAGTAGAATAGAGGGTACAGAGTCATTGATGTTAATCAATGGGCATTACTGTTATGTGTAATAATGGGTATGTGGGCTTAGCTACTGGCTGCCTACATTCTTGTATGTATTCCTCAGACATTTCTATATCAG

Functional annotation

Database	accession number	e-value	annotation
nr	QDQ03542.1	1.5e-60	MYB26
Swissprot	Q8LPH6.1	1.5e-54	Myb-related protein 86
trEMBL	A0A516QJV7	1.1e-60	MYB26

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G13890.2	85.96	1e-58	223	ATMYB26;MS35;MYB26	myb domain protein 26

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC5G06175	AT3G13890.2	114	16	0	5	118	4	117	85.96	1e-58	223
AfisC5G06175	AT3G13890.1	123	16	1	5	118	4	126	79.67	3e-56	214
AfisC5G06175	AT5G26660.1	113	19	0	5	117	4	116	83.19	1e-55	213

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	15	62	59.8	1.9e-16
PF00249.28	Myb_DNA-binding	Domain	68	111	59.6	2.1e-16

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0001944	P	vasculature development
GO:0050832	P	defense response to fungus
GO:0005634	C	nucleus
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0009611	P	response to wounding
GO:0009651	P	response to salt stress
GO:0009723	P	response to ethylene
GO:0009733	P	response to auxin
GO:0009737	P	response to abscisic acid
GO:0009739	P	response to gibberellin
GO:0009751	P	response to salicylic acid
GO:0009753	P	response to jasmonic acid
GO:0009800	P	cinnamic acid biosynthetic process
GO:0009901	P	anther dehiscence
GO:0010089	P	xylem development
GO:0010091	P	trichome branching
GO:0010119	P	regulation of stomatal movement
GO:0010214	P	seed coat development
GO:0010224	P	response to UV-B
GO:0044212	F	transcription regulatory region DNA binding
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0046686	P	response to cadmium ion
GO:0043565	F	sequence-specific DNA binding
GO:0048364	P	root development
GO:0048658	P	anther wall tapetum development
GO:0052545	P	callose localization
GO:0055046	P	microgametogenesis
GO:1900384	P	regulation of flavonol biosynthetic process
GO:1901348	P	positive regulation of secondary cell wall biogenesis
GO:1903086	P	negative regulation of sinapate ester biosynthetic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09422	MYBP; transcription factor MYB, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network