result

Gene information

Detail information of AfisC5G06411

Location

Gene	Chr	Start	End	Strand
AfisC5G06411	chr5	1192471230	1192471802	-

Sequences

CDS

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020201575.1	9.3e-48	transcription factor MYB21-like
Swissprot	Q0JB89.1	1.2e-47	Probable transcription factor MYB58
trEMBL	A0A453RKL8	6.7e-48	HTH myb-type domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G60460.1	75.93	8e-47	182	DUO1	myb-like HTH transcriptional regulator family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC5G06411	AT3G60460.1	108	26	0	15	122	8	115	75.93	8e-47	182
AfisC5G06411	AT4G26930.1	153	67	3	14	155	18	165	45.75	2e-34	141
AfisC5G06411	AT2G26960.1	140	58	3	2	131	6	144	50.71	5e-34	140

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	17	62	51.1	9.8e-14
PF00249.28	Myb_DNA-binding	Domain	73	113	52.1	4.8e-14

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0050832	P	defense response to fungus
GO:0005634	C	nucleus
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0009414	P	response to water deprivation
GO:0009416	P	response to light stimulus
GO:0009611	P	response to wounding
GO:0009625	P	response to insect
GO:0009651	P	response to salt stress
GO:0009682	P	induced systemic resistance
GO:0009723	P	response to ethylene
GO:0009740	P	gibberellic acid mediated signaling pathway
GO:0009751	P	response to salicylic acid
GO:0009789	P	positive regulation of abscisic acid-activated signaling pathway
GO:0009809	P	lignin biosynthetic process
GO:0009860	P	pollen tube growth
GO:0009867	P	jasmonic acid mediated signaling pathway
GO:0010091	P	trichome branching
GO:0010200	P	response to chitin
GO:0010438	P	cellular response to sulfur starvation
GO:0010439	P	regulation of glucosinolate biosynthetic process
GO:0044212	F	transcription regulatory region DNA binding
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0042335	P	cuticle development
GO:0043068	P	positive regulation of programmed cell death
GO:0043565	F	sequence-specific DNA binding
GO:0045926	P	negative regulation of growth
GO:0048235	P	pollen sperm cell differentiation
GO:0080086	P	stamen filament development
GO:0080091	P	regulation of raffinose metabolic process
GO:0090406	C	pollen tube
GO:2000652	P	regulation of secondary cell wall biogenesis

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09422	MYBP; transcription factor MYB, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network