result

Gene information

Detail information of AfisC5G06413

Location

Gene	Chr	Start	End	Strand
AfisC5G06413	chr5	1193505292	1193507555	+

Sequences

CDS

>AfisC5G06413
ATGGCAGCTCATCATAAACTCACAATCTTACTCTCAGTAACGACTCCATTCCTCTTCCTCCTCCTACTCTACTTCCTTTTCTACTTCTACAGATCAAAGCGCTTGCACACCAAATCCATTTCAACCCCATTTCAACCTGAACCCGACTCCGAAACCCTGGTTAAGTTCTCGGGCGGCGAATCCTTAACGATTCATGAAATACTAGACGCACCTGGAGAAGTAGTAGGCAAATCTAGCCACGGAACTCTGTACCGGGCAGGGTTCGCGAAGAGCGGGTCGGTTATGATGCTGAGATTCATCAGACCTGCTTGTGTTGGGAATGCGGACGACGTTGAGAACACGGTTCGTGCTATCGGGTCTGTTAGGGACCCTAATTTGGTTGAGCTTAGAGCAATGTATGTTGGGCCTCGAGGGGAGATTTTGTTCATTTATCCATTTTTTGGCGGTGGCAATTTGGCACAGTTTTTGAAAGATGGAAAACCAGAATCACACAACTGGGACATAATCCACAAACTATCACTGGGCATTGCCAGAGGCTTAGATCACCTTCACAACAATACACCCAATCCAATAATCCATGGAAACCTGAAATCGAAAAACATATTACTTGATTCAGATCATCAACCACACTTATCTGATTTCTGTTTACATTCGATATTAAACCCATCTTCTTCACAAGAGATGCTTGAATCTTCCGCATCACAGTGCTACAAAGCTCCCGAGCTCCTCAAAATGAAAGACGCCTCCACAGTGACCGATATCTACAGTCTTGGAGTCATTTTTCTTGAAATCCTAACTCGAAAAGACTCGACTAATCTCCATCTTCCTCCGTCCTTAAAAACGAATTTGTTCATCGAAAACAAAATCTCTGAAAGGTTAACGGAAGATAAGAATTTGAGTATCGAGGAAAGGTTGGTTAAGTTCTTTCATTTGGCCATGGCTTGTTGCTCTCCTTCTCCTGTTTTGAGACCTAACATTAAGCAGATTATTAGGGAACTTGAAGAATTGTGA

Protein

Gene

>AfisC5G06413
ATTTAATACTTCAACTTCTCTCTCTTTCATCCAACAAACAAATAGTAGTCTCGTTTCTTCTCTCCTTTTCTGTCTCCGCTACACCCCTTTTGATTAACTTTTCTTTATTAATGGCAGCTCATCATAAACTCACAATCTTACTCTCAGTAACGACTCCATTCCTCTTCCTCCTCCTACTCTACTTCCTTTTCTACTTCTACAGATCAAAGCGCTTGCACACCAAATCCATTTCAACCCCATTTCAACCTGAACCCGACTCCGAAACCCTGGTTAAGTTCTCGGGCGGCGAATCCTTAACGATTCATGAAATACTAGACGCACCTGGAGAAGTAGTAGGCAAATCTAGCCACGGAACTCTGTACCGGGCAGGGTTCGCGAAGAGCGGGTCGGTTATGATGCTGAGATTCATCAGACCTGCTTGTGTTGGGAATGCGGACGACGTTGAGAACACGGTTCGTGCTATCGGGTCTGTTAGGGACCCTAATTTGGTTGAGCTTAGAGCAATGTATGTTGGGCCTCGAGGGGAGATTTTGTTCATTTATCCATTTTTTGGCGGTGGCAATTTGGCACAGTTTTTGAAAGGTTCGTGATTTTTAATTTGATTGTGCTTGATTAATGATCATTTTGTTCTGTACTTTAAACAAGCTTGTCAATTTCTTCATTTAGGAGTTGGAATAGAAATAGTAAACAGAAGTAATAATGGCTCTTTTTTGGCTTTTATATGAAAAGTCATTTTTTGTTGATTAATCTGGATATATAGATTTCTAAAAGACATTGTATTTTTTTGAATAAACACCAAAACAAACAAGTAGCAATCCAGAGATTTATCATGTAAATTATTCAATTCTTGCTTGAAACAGATTCTTTTGAAGATCAATTATTGCTGTTTCATAAATATGCTTTTGTACAGTATGAATGAACAAACTTTTCATTTGTAGCTATAACTTATATCTGTTTTTAAGCTATTATTAACTAAAAGCAAATGTTTTTGGACAGATAAGTTAAATTTTGATAGAAAAAAAAAATTGAAATAAGTCCTCATTGTTGCCAAACACATAAATTCAACAAATAAGTAATGAGTTGTTCATGATATTTTAATAGGAATGACGATATTAATCTAGATCATTGAACCTATTTTTGTAAACTGCACTCCTTTTCTTGTTTAACTTATATAACTCTTATGCATTCATCAATACACAGATGGAAAACCAGAATCACACAACTGGGACATAATCCACAAACTATCACTGGGCATTGCCAGAGGCTTAGATCACCTTCACAACAATACACCCAATCCAATAATCCATGGAAACCTGAAATCGAAAAACATATTACTTGATTCAGATCATCAACCACACTTATCTGATTTCTGTTTACATTCGATATTAAACCCATCTTCTTCACAAGAGATGCTTGAATCTTCCGCATCACAGTGCTACAAAGCTCCCGAGCTCCTCAAAATGAAAGACGCCTCCACAGTGACCGATATCTACAGTCTTGGAGTCATTTTTCTTGAAATCCTAACTCGAAAAGACTCGACTAATCTCCATCTTCCTCCGTCCTTAAAAACGAATTTGTTCATCGAAAACAAAATCTCTGAAAGGTTAACGGAAGATAAGAATTTGAGTATCGAGGAAAGGTTGGTTAAGTTCTTTCATTTGGCCATGGCTTGTTGCTCTCCTTCTCCTGTTTTGAGACCTAACATTAAGCAGATTATTAGGGAACTTGAAGAATTGTGATATTGGAGTAATTTAATTTGATTAGGGGGTTAATTAAGATGGAGACATGAATGCAAAGTTTGTGCATCTGCATGTGGTGGTTGTACCATTATTAAATTGTTAAGTGTAAGGTATAGCTTCAACTGACATGGCCAGCTTCTTCAACAGCAACTGATATTAAATGCAAGTGATAATGACAGTACTTTGATGTGTGAGGGTGCGTAGTGGCTTTTCACTGACTTACTGAACAGGTTATCTGATATTTAGCTTTGTATTCTGGGGATAAGATCACATGCATGTTTTAGTTTGAGGTTCATATATATTGATATGAGCCTCTAAATCAAAATATTTTTAGATGCTCAAATCAATGGATGAATTGTGCTTTGCTTTCCAACTAGAATACGTGATTCCTTTTTGTGTTCGGAGATGAAAAATTGAATGTATTGGTTTGGTGTTTTGAAGGAGAATGAAATGTAAAATTTGGATTTTGAATTTATTTCATATTCTATGAAGATAAGCAAAACTGGTCAGAAAATACTATTCCTA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020263225.1	4.3e-108	LOW QUALITY PROTEIN: putative kinase-like protein TMKL1
Swissprot	P33543.1	6.4e-48	Putative kinase-like protein TMKL1
trEMBL	A0A6I9R363	4.2e-97	putative kinase-like protein TMKL1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G07620.1	50.17	1e-81	300		Protein kinase superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC5G06413	AT5G07620.1	303	134	5	49	336	56	356	50.17	1e-81	300
AfisC5G06413	AT5G61570.2	356	176	5	1	336	1	356	44.94	1e-80	296
AfisC5G06413	AT5G61570.1	359	176	6	1	336	1	359	44.57	3e-79	291

Ortholog group

Species	Genes
Allium cepa	g334139.t1
Allium fistulosum	AfisC5G06413
Allium sativum	Asa4G05078.1; Asa4G05081.1
Arabidopsis thaliana	AT5G07620.1; AT5G61570.1; AT5G61570.2
Oryza sativa	LOC_Os02g43870.1; LOC_Os04g46320.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF07714.14	Pkinase_Tyr	Domain	108	333	93.5	1.2e-26

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0001101	P	response to acid chemical
GO:0004672	F	protein kinase activity
GO:0043231	C	intracellular membrane-bounded organelle
GO:0006950	P	response to stress
GO:0009505	C	plant-type cell wall
GO:0009506	C	plasmodesma
GO:0009620	P	response to fungus
GO:0009628	P	response to abiotic stimulus
GO:0009725	P	response to hormone
GO:0009791	P	post-embryonic development
GO:0022626	C	cytosolic ribosome
GO:0044237	P	cellular metabolic process
GO:0044446	C	intracellular organelle part
GO:0044702	P	single organism reproductive process
GO:0048608	P	reproductive structure development
GO:0071704	P	organic substance metabolic process
GO:0097159	F	organic cyclic compound binding
GO:1901363	F	heterocyclic compound binding
GO:1901700	P	response to oxygen-containing compound

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network