result

Gene information

Detail information of AfisC5G06417

Location

Gene	Chr	Start	End	Strand
AfisC5G06417	chr5	1194796251	1194799021	-

Sequences

CDS

Protein

Gene

>AfisC5G06417
ATGGCTACAACAACAACACTAGACACAATCCGCCACCACCTCCTAGGCACCGAAACCACCAATATAAAACCAACACCAGTACAAACACCAGCACCAAGCAACCTCATGTTCGCATTAGGGTCCGAACCCAACATGATCCGATTTGGATCCGACTCCCCTCCTTCTGACCGCCGCCCTTTCCTCACCATCTCCCCACCTAAAGTCGAGTGGTCAAACTTCGCCACTACAGCCATCAGTAACACTTCATCATCAGAAGTGGAGGATGCACGTAGATATAGAGGAGTCAGGCAGCGCCCATGGGGCAAGTTCGCTGCTGAGATCCGCGACCCAACCCGTCGTGGGTCTCGGGTCTGGCTTGGCACTTATGAAACCGCTGTTGAAGCAGCGAGGGCATATGATAAGGCAGCGTTTCAGATGAGAGGTAGGAAGGCCATTCTCAACTTCCCTAATGAGATTGGAAGCTTCAAGAATGTTGTTTCTGGCAATAGCAGTATGAACCAGAAACCGAAAACTGCTAGTACTGATGAGTTGATACAAATAGAAGAAACAATAGCAGACGAAGTAATACTAATAGAAGAAACTGTAGCAGATAATTTTGTTACGGTAACAAATAAGAGGAAAAGAGAAGATCATGCGAATGAAGATGATAGTAGAATGGTGAGGAATGAAAGATTGGAGGAGAAAGAGAGTACGATGACAAATTACCCATTGACGCCATCAACTCCGTCTTTTTGGACTAGTATTTTGGAGGGTGGAAATGGAATTTGTGATATGCCCTTGTTATCGCCATTGTCTCCACATCCCTGGGGTTTTCCAAGGACTATAGCTATTTGACTTGGTTGCCTAAAATCTTTAATTCTCTATAATGTGTGCGAAATCAAGATCTTGGATTTGGTGAAATGTATAAAGTGACAGGCATGTTATTGAAACTTAAAGCTAAATGTTATGTCAAATAGATGCTATATATCTTGTTTATAATCATGCTGATGTAAACACTTCTTCGTATCACTATTTCATGCAATCGTACTAATGAAGCATTCATAGTTTCATATCATATGGAACACAATATATTTCTCTCCTTGTACATAAAATCTTCCATATACATGACAAATTTCATTAAGCGTATTATACATACTTACATTGTGTGTGGGAATAAAAATACCTAAAGGTTAAGTTGGAAGTGGGGGTAGCTGAAATTAAAAGATATACATAAGATGAAAGCAATATCTTGTTTTTAATTAATCTATCTACTGTAGATACAGTTTAATATAACTGAAATTTCAAGGTTATTAATGCCGTTATATATACAATCGAATTCTTCTCTGATAAGAAGGCTAAGCTGTAGTATCCATATCATATCCTACCCAGAACACAGTACTCATTCCAAAATACATAAAATCATCCATAACAATATACCAAGTTTAATTACTACGTGCGTCCCAAAACTGAAATATCTTAAGAAAAGTACATAATATTATGCATACAGTCGGGAAGGATCTTGCTTTTTTCGTTTTCATGTCTCATACGTGAATATTGGGACATCCATTCGATCCCAAGTGAGGGGAACAAGGTTACAAGAGTTGCATGACTATGAACACTTTTTGAAGCACCATGTTTCATGTTTATAATTATTCATATAGTAATACAGATCACTTATTCTCCAAAGGATATGAAAACTCTGAGCATAGAGTGCCCATATTATATATCCTTTTATTAAATACATTATTTTCTTCAAAAATAACATGTGTCATACTACAGCATTTCATTATCTATATATGCATATGTAAAAGGGATGTAATTTATCAGTTAAAAGATGTACATGTCGAAAAAAAGTTGAAAGCTATATATCTTGTTTTTAATTTTTACCAATGTAGATACCAAATTCCTTGATAATATTATGATATTGCAACTTATATTTTTCTCTGAAAGCAAACAAGGCTCTTAAAATGTAGTCTCCATATCATATCCTACTACCGAGAACACACAATACTATGTGTATTATGCATCCCAAAACAGAATTATAGAACATAACATCTGAGTTTGTTTCTACTCATGTCACATGTGAGAATTGGAACAGTCATCACTAAGCGAAATAAAATAACTGTTGTCTGAAAAGAGGGGGAACAAGAGTAGTATGAAAGGAAATCATGAACTTGGCCACATTCGTTGAAAATATAATAGAATATCGATGTATATGAAGTACAAACAATTATTAGTGTATATTTTAAAGCAAGTTGTTGCTTATTATAATGTTGTCTGTATTCCATTATTTTATATATGATTAGAACGTTTTCAAACAGCACCATGAATAAATAAACATGAAAAGGTTAATTGTATTATTAAAGTTTGACCTGGTCGTGGTAACATGGACTAGATAAAATAAAAACATGTAGCCTATAACGACATTGCACCGCATCTATACGAAATAAGTCTTTGGCCTCTTGGCTTTACCCTGATTAATTAAAACGCTACCGAGACGGTTTGTCGACTTAACTTGTTTCCCATTCAATCGGTTACCCTAAAATCTCTACAATTGTGTAGTTGATAGGAGTTTTATTTGTTTAGAGAAGTTATATGTTGTTTTATACTGTCATCGTTAAACTTAAGTTGGGGTTCTAGTTGTGTTTATACATATTGGATGCCCTAGTTTACTATATTTTGTTAGCTTCGTATATTGATGAATTTCGAATAAACAAATGTAAATTGTACGTGTTTTAAGCATAGTTTCGAAGATCGAACCATGAATTGAATCATGTTGATGCATGGTCAAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_008786269.1	7.9e-39	ethylene-responsive transcription factor ERF105-like
Swissprot	Q40478.1	5.9e-31	NtERF4
trEMBL	A0A8B7BVG9	5.7e-39	ethylene-responsive transcription factor ERF105-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G47230.1	40.64	1e-33	140	ATERF-5;ATERF5;AtMACD1;ERF102;ERF5	ethylene responsive element binding factor 5

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC5G06417	AT5G47230.1	219	77	7	57	268	118	290	40.64	1e-33	140
AfisC5G06417	AT5G51190.1	196	75	4	73	264	52	210	40.82	1e-32	136
AfisC5G06417	AT4G17490.1	266	97	8	28	277	74	282	36.09	1e-31	133

Ortholog group

Species	Genes
Allium cepa	g244144.t1
Allium fistulosum	AfisC5G06417
Allium sativum	Asa0G00055.1; Asa0G00056.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00847.17	AP2	Domain	91	141	49.2	4.1e-13

Gene Ontology

Accession	Ontology	Name
GO:0000976	F	transcription regulatory region sequence-specific DNA binding
GO:0001944	P	vasculature development
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0009409	P	response to cold
GO:0009414	P	response to water deprivation
GO:0009789	P	positive regulation of abscisic acid-activated signaling pathway
GO:0009835	P	fruit ripening
GO:0009864	P	induced systemic resistance, jasmonic acid mediated signaling pathway
GO:0009873	P	ethylene-activated signaling pathway
GO:0010186	P	positive regulation of cellular defense response
GO:0010200	P	response to chitin
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0019760	P	glucosinolate metabolic process
GO:0051301	P	cell division
GO:0090332	P	stomatal closure
GO:1904277	P	negative regulation of wax biosynthetic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09286	EREBP; EREBP-like factor	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network