result

Gene information

Detail information of AfisC5G06818

Location

Gene	Chr	Start	End	Strand
AfisC5G06818	chr5	1272439783	1272443083	-

Sequences

CDS

Protein

Gene

>AfisC5G06818
GTGACCCCTATGTTAATATCTCTTAGTCAATTACTTTCGAGTCGCCTCCTGTGCTACTGAGAGAAGTTATAATGGCAGAAGAAAGATCTTCCTGCATAATTGTTTTTCAGTCCAACAATACGTTTGAACTTTGAGTGTCCTCAGAGATTTAACACAGGTAAGCACAGCCTTTTGATTTCCTGAATTTGCTTTTATGCTCTATTAGTCTAGCCTGTGAGTGATTTTATTTGGAGTTTCAGTGTGTTATTTTCTTCTTCTTTACGACTTGATTATTGCCCTGCAATCTATTTTTTGGTATCTTAAAAAAAAAACTTTGGAAGTTCAAAAAGGATTTGATGTAGATATGCTTTCTAAATTTCTGAGGTTTTGATATTATTCTTGATTTCCAACCAAACTTATGAAACTCCCACTAATCTGGAAATTGTACTATTAAGATCTTAGCATCCTTCAATATCTGAATTATATGTCGATTACAGCCTGTTAGAGTTTGATTAATGTTTACCTAACTATTTAATTATTTACAGACTAGCTGTATCTTCTACTCTTAATATTTTTGAAGATTTGATTCTCTTTATATCATTTATTGTGAACTGATCATTTTTTTAACAGATACAGCAAGCGTGCAAATTAAAAATAAAATAAAAACAAATTTGTGCAAAACCATAAAATTGATGTCATATGGATCAACTCAACTTCATCAATGAATGGAGTAGCTCTCTAGAACGTGATTTCCAGCTACCTTTTCTTTCATATATCCCAAATTTCTCCACCACCACATCATCATCAGATCTTCTTAATTCATCATTTCTTGAAAATCCCGTGTTTTCAGATAGGCCTAGAAAATTTCCTAAGACAATCAGTTGGAGTAATGAAGAAAATTTGGTCCCCAAAAATGAGCCAGAAAAATTATTAGACTGTAATGAAGAGTTGGTTAACTGGAAATGTCAGTCAGTTAACAATCAAGATAAAGGTTTGATGAAGAAAACTCCACATGAACATATAATTGCAGAAAGGAAAAGGAGAGAGAAGCTTAGTCAGAAGTTCATTGCACTTGCTGCAATCATCCCAGGTTTGAAAAAGGTATACTATCTTGATTATTAATTTATTCGTTTGTTTTCTGCTTATTTAAATGATTAATGTAGCTAATATGATCAAAAAAATTATTTTATTTTTAAATTAAAATCTAGTAAATCTGATAACTTGGCTCCCATATATCCCTTTTATTATATGTGGTATGTGGAGATCGCTAATTTTTCGTTAGCGAGAATAGCATATTCTAAATGCGGTCATATGTCAATTTGTTGAACTATTTTCAACAAAGTTCATATTGAGGGTATTTGAACTGGTCACCTTTTTAAGCTTGTCTATACATGCTAGTGAATACTATTTATTCAATGCTAACATTTTTGGTTGACAATAATACTACCATGTGAAATCAATTTCTACTGTACAAACATAAATGCTGCCGGAATTCAGACATATCTTGGAACTTTTTTATGTTTGATTATTCAACTACCTAACATGCATGCATTTGAGCTTGAAAATAAATGGATAGTTAATTTTGTGTCTTTTTTATGAACCTATTACTAGTTTAGTGAATAATTTACATTTCATGCATTTGCAGGTTACACAAGCTTAACTATTAACATCTTTAATTTTTGTTTTATTTTATTTAAGCATAATCCTCATTTTGGATAATTAAGGTTGACAAAGCTTCGATTCTAGGCGACACAATCAACTATGTAAAGCAACTCGAACAGTCTCTGAAATCTTTAGAAGGGCAAAATGCAAGAAAAACAATTGAATCAGTAGCCCTTTTCAAAAGTTCTGAGAAATGCATGCAAAACACTGGTGAGGATTTAAAAGCTAGCATGATTAATGGAAATACATCAGACTCTGATAGTGGAGGTTTAGTAGAAAATACGAGCTGTCCAGAGATCGAAGTAAGAATAAGTGCAAAAAGTGTTCTTGTGAGAATTCATTGTGAAAATATCAAAGGAGTGCTAGTGAAAGTTCTATCCGAGATGGAAAAGCTAAATCTTGTAGTCATGAATGCTACTGCCTTGCCTTTCGAATCATTTCTTGATATAACTGTTGCTGCTCAGGTATATATCCTATGATCTTATAATTTACTCTGAGAATTCTGAAATATCAGGACATAGGGAAAAAGCACACTTTACTATATAAAAATGCACATCCATATCGTAATAGCTATTTTATTTCCATATTCATATCAGTAATAGCACTGCTTTATACCCCAAATCTTTTACTAACTATTAACCATTACCACTTCATTTAATAACTATATCATTTTTTAGTCGGCAACACTGTATCCTTCAAACTAAGGTTAGCTGTACATTATTCACCAAAAAAAACACCCAAATGACACTTCATTCAGGAAACTACTGCCAACCATGATGGGTAATAATTGTCATGGGTGTTGGTACATAAAAATTTGATGTTTATCGCAATGCTCCATACTAAAATCAGTATGTTTTTTGCCCCTTCAGTTGAAGCAACAAAACATCACACTTTAACACGTTTTAGATGAGAGCAGTAAAAAATAAAAATAAAAATAAAGAAAATAAATTAATACAATATCATGCTCCTTAATTTACATTCTTCTCATAAGTTGGTGTTTAAATAGTTATTTGGTGATATATGCCAAAATTCATTTCACCTTAAATTTTGGAAACACCTTACAAATAATATTTCAGACTGTACTTAAAGATGAACCTTAAACTAGTTCTTAGTAGAGTGGAATCACTTTGTAATTGTATTAAACTCTGGAATCATGGCAAAGTTTGTGTAAACTAGTGTGTAAACTAATATATGTGTGTGTTGATATATACATGTACATACGTACACACAGATATACACACATACATATATTACTGCAATTAATTTGTTTTGTTTTTCAAAATGAAGTAAATGTATATATTTACACACACATTCATTAGTGTAATTAATTTGTTTTTTTTTTTCAAAATGAAATAAATGTAGATGGAGGAAGGAATCTCAATGACAGTCGATGTTCTCGCGAAGAATATACAATCCATTTTTCACCAATCAGCATGCAATTAAGCATAAATTTGTAGGTTTGCACGTGTATCTTCTTATCTACGGCGAGCTTTTACTGCAAATTTTTGTACATTACCGCACCTATAAATAGATACATTTGTTTGCAAACTAATGCAATCACGTGTTTGTATATTTATCTATTGTATTTAATTGTCATGCTTTTCTGAATTTACCGATTAGTATCTTGGAGATGTGCATTCTTATATTTAATTTTTATCTT

Functional annotation

Database	accession number	e-value	annotation
nr	RWW31290.1	4.7e-42	hypothetical protein GW17_00004085, partial
Swissprot	Q9T072.2	7.4e-32	bHLH transcription factor bHLH025
trEMBL	A0A7M3UQK8	6.2e-44	BHLH transcription factor

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G37850.1	42.54	4e-36	148		basic helix-loop-helix (bHLH) DNA-binding superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC5G06818	AT4G37850.1	181	94	2	106	286	152	322	42.54	4e-36	148
AfisC5G06818	AT2G22750.2	179	92	1	106	284	126	297	44.69	3e-33	139
AfisC5G06818	AT2G22750.1	179	91	2	106	284	126	296	44.69	5e-32	135

Ortholog group

Species	Genes
Allium cepa	g457156.t1
Allium fistulosum	AfisC5G06818
Allium sativum	Asa4G04780.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00010.23	HLH	Domain	107	152	38.5	7.5e-10

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0001708	P	cell fate specification
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007029	P	endoplasmic reticulum organization
GO:0009409	P	response to cold
GO:0009813	P	flavonoid biosynthetic process
GO:0009891	P	positive regulation of biosynthetic process
GO:0010026	P	trichome differentiation
GO:0010440	P	stomatal lineage progression
GO:0043565	F	sequence-specific DNA binding

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network