Gene | Chr | Start | End | Strand |
---|---|---|---|---|
AfisC5G06889 | chr5 | 1284098293 | 1284106541 | - |
CDS |
Protein |
Gene |
Database | accession number | e-value | annotation |
---|---|---|---|
nr | XP_020260956.1 | 2.8e-263 | lysine-specific demethylase JMJ18-like |
Swissprot | F4I6G4.1 | 3.6e-215 | Protein JUMONJI 18 |
trEMBL | A0A6P5GBW6 | 3.1e-240 | lysine-specific demethylase JMJ18-like |
TAIR id | % identity | e-value | bit score | gene aliases | Short description |
---|---|---|---|---|---|
AT1G30810.1 | 51.58 | 0.0 | 799 | JMJ18 | Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein |
Species | Genes |
---|---|
Allium cepa | g112370.t1; g191365.t1 |
Allium fistulosum | AfisC5G06889 |
Allium sativum | Asa4G04677.1 |
Arabidopsis thaliana | AT1G30810.1; AT1G30810.2; AT2G34880.1 |
Oryza sativa | LOC_Os05g23670.1 |
Pfam ID | Pfam name | type | alignment_start | alignment_end | bit_score | Evalue |
---|---|---|---|---|---|---|
PF02375.14 | JmjN | Family | 84 | 117 | 49.8 | 2.2e-13 |
PF02373.19 | JmjC | Domain | 316 | 432 | 155.0 | 8.5e-46 |
PF02928.13 | zf-C5HC2 | Domain | 538 | 590 | 39.6 | 4.4e-10 |
PF05964.11 | FYRN | Family | 705 | 749 | 40.9 | 1.2e-10 |
PF05965.11 | FYRC | Family | 756 | 842 | 77.5 | 6e-22 |
Accession | Ontology | Name |
---|---|---|
GO:0005515 | F | protein binding |
GO:0000976 | F | transcription regulatory region sequence-specific DNA binding |
GO:0003714 | F | transcription corepressor activity |
GO:0005737 | C | cytoplasm |
GO:0016491 | F | oxidoreductase activity |
GO:0007338 | P | single fertilization |
GO:0009555 | P | pollen development |
GO:0009793 | P | embryo development ending in seed dormancy |
GO:0009910 | P | negative regulation of flower development |
GO:0010216 | P | maintenance of DNA methylation |
GO:0045893 | P | positive regulation of transcription, DNA-templated |
GO:0045892 | P | negative regulation of transcription, DNA-templated |
GO:0019907 | C | cyclin-dependent protein kinase activating kinase holoenzyme complex |
GO:0031981 | C | nuclear lumen |
GO:0033601 | P | positive regulation of mammary gland epithelial cell proliferation |
GO:0034647 | F | histone demethylase activity (H3-trimethyl-K4 specific) |
GO:0034648 | F | histone demethylase activity (H3-dimethyl-K4 specific) |
GO:0034720 | P | histone H3-K4 demethylation |
GO:0046914 | F | transition metal ion binding |
GO:0048511 | P | rhythmic process |
GO:0048579 | P | negative regulation of long-day photoperiodism, flowering |
GO:0060444 | P | branching involved in mammary gland duct morphogenesis |
GO:0060763 | P | mammary duct terminal end bud growth |
GO:0061038 | P | uterus morphogenesis |
GO:2000864 | P | regulation of estradiol secretion |
KO | Name | Enzyme ID | Pathway | Pathway ID |
---|---|---|---|---|
K11446 | KDM5, JARID1; [histone H3]-trimethyl-L-lysine4 demethylase | EC:1.14.11.67 | - | - |