Detail information of AfisC5G06889


Location
GeneChrStartEndStrand
AfisC5G06889chr512840982931284106541-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020260956.12.8e-263lysine-specific demethylase JMJ18-like
SwissprotF4I6G4.13.6e-215Protein JUMONJI 18
trEMBLA0A6P5GBW63.1e-240lysine-specific demethylase JMJ18-like

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT1G30810.151.580.0 799JMJ18Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag112370.t1; g191365.t1
Allium fistulosumAfisC5G06889
Allium sativumAsa4G04677.1
Arabidopsis thalianaAT1G30810.1; AT1G30810.2; AT2G34880.1
Oryza sativaLOC_Os05g23670.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF02375.14JmjNFamily8411749.82.2e-13
PF02373.19JmjCDomain316432155.08.5e-46
PF02928.13zf-C5HC2Domain53859039.64.4e-10
PF05964.11FYRNFamily70574940.91.2e-10
PF05965.11FYRCFamily75684277.56e-22

Gene Ontology
AccessionOntologyName
GO:0005515Fprotein binding
GO:0000976Ftranscription regulatory region sequence-specific DNA binding
GO:0003714Ftranscription corepressor activity
GO:0005737Ccytoplasm
GO:0016491Foxidoreductase activity
GO:0007338Psingle fertilization
GO:0009555Ppollen development
GO:0009793Pembryo development ending in seed dormancy
GO:0009910Pnegative regulation of flower development
GO:0010216Pmaintenance of DNA methylation
GO:0045893Ppositive regulation of transcription, DNA-templated
GO:0045892Pnegative regulation of transcription, DNA-templated
GO:0019907Ccyclin-dependent protein kinase activating kinase holoenzyme complex
GO:0031981Cnuclear lumen
GO:0033601Ppositive regulation of mammary gland epithelial cell proliferation
GO:0034647Fhistone demethylase activity (H3-trimethyl-K4 specific)
GO:0034648Fhistone demethylase activity (H3-dimethyl-K4 specific)
GO:0034720Phistone H3-K4 demethylation
GO:0046914Ftransition metal ion binding
GO:0048511Prhythmic process
GO:0048579Pnegative regulation of long-day photoperiodism, flowering
GO:0060444Pbranching involved in mammary gland duct morphogenesis
GO:0060763Pmammary duct terminal end bud growth
GO:0061038Puterus morphogenesis
GO:2000864Pregulation of estradiol secretion

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K11446KDM5, JARID1; [histone H3]-trimethyl-L-lysine4 demethylaseEC:1.14.11.67 --

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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