result

Gene information

Detail information of AfisC5G06970

Location

Gene	Chr	Start	End	Strand
AfisC5G06970	chr5	1303016837	1303020451	+

Sequences

CDS

>AfisC5G06970
ATGGATATGCAAACAAATTTTCTCCAAATAACCTACAAACCAGAGATAACAAACGGGAAACCTATACACATCTCATCAAATGCACTTCCATCTAAGGCATCAAACTACGAACCAGCTGGTCTTTCCTTTCATCTAGCCGCCCTGAAACTCTCTGGCTACAACAACAAAGAAGACAAAGATACAGACACAGACGACCAAAGCGTGAAATCAGATGACAGAGACCAAACTTACATCCCATCCTCAGAACCCTACACCAAAAACAAAAAGAAAGGCAACGACAAAGACGATAGCAAGCAACAAGATCACTATGCACTAATAGGCCTAGGGCACCTACGCTTCCTAGCCACCGAAGACCAAATCAAGAAATGCTATCGAGAAACCGCCTTAAGGTACCACCCCGACAAACAAGCCTCACTTCTTTTATCAGAAGTGACCGAAGAAGCAAAGCAGAAGAAGAAAGACGAGATAGAGAATCACTTCAAAGCAGTTCAAGAAGCCTATGAGGTGTTAACCGACCCTATGAAAAGAAGGCTGTACGACTCCACTGATGAATTTGACGATGCTATACCGACTACTTGTGGGCCAAACGATTTTTTCAAAGTGTTCGGGCCCGTATTCATGAGAAACGGTAAATGGTCGGTGGCCCAACCCGTTCCTAGTTTAGGAGACGAGGGCACACCATTAAAGGAAGTCGATGGGTTTTATGATTTTTGGTATTCTTTTAGGAGTTGGAGGGAGTTTCCTCATGCCGACGAGCACGATATTGAGGAAGCAGAGTCTCGAGATGAAAAGAGATGGATGGAGAGGCAAAATGCGAAATTGAGAGAGAAAGCTCGTAAAGAGGAGTATTCCAGAGTCAGGAGCCTTGTGGATAATGCTTATAGAAAAGACCCTAGAATACGTGGTAGAAAAGAGGCGGAAAAGGCGGAGAAATTGAGGAAGAAGGAGGCTAAATTGATGGTGAAAAGAAAGCAAGAGGAAGAGGCGGCAAGGGCAGCCGAAGAGGAGAAACGTAGGAAGGAGGAGGAGGAGAAGAAGGCAGCCGAAGCTGCTGCTATTCAGAAGAAGAAGAAGGAGAAGGAGAAGAAGCTTCTGAGGAAGGAGAGGAGTAGGCTTCGTGCACTTTGTTCGAATTCGGGTGTTTCGGTTGATGATGTCGAGAGCTTGTGCATGTCGCTCGATATGGAGAATATCAAATGCTTGTGCGATAACCTGGAAGTGATAGAAGATGATAGTAAGGTTAAGGAGCTGAAACTTGCATTGAGTGAAGGAAACACTTACACTTCTAAAAGTTCAAATTTGAATTTAAATTCGAATTCAAATGGGGATGCGAATGGAAATGTAAATGGTGAAGAGGAAACATGGTCGGATGTGCAAGAAAAGGAGCTTTTTGAGGCGTTGAAAACGTTTACGACAGAAGATGGGAAATGTTGGGAAAAAATTGCAGCTTCTGTTACGGGAAAAACTGTTGGTCAGTGCAAGATGAAGCTTGAGTCGATGAAGGAGAATTATAGAGGGAAGAAAGAAACCTGA

Protein

Gene

>AfisC5G06970
GCCCATTCAGAAACAGCCCGACCAATGATAAAAGAATCCCTTTATATTCGATTTTCTTCCAAGGTATAAACCCTCTTCATTATTTTCAGAACTGCCGCCGCCTTGCTCCAGATCAAACCCAGTTTCCTATTATCAAACGCAAGGTACCAACATTCTATTCTTTGCTGTCTTCCTTGTAAAATTATGAAACTTCACTGTTTAAAACTTTTGATTTCTGTGCACGACCCGTTCTAGTTGATTTTGTTTGTATAAGCTTGGTTTTCAAATGGGAAAAAAAATGTTTTCAATTATGTGGAGAAACTTGAATTGTAGGTATGCATACTGTCTTTGATTTGTTGTATGATGAAATTGAAGTGTTTTTGGAATCCGTCATAAATGTTGCAGATCTTCACCTAACCCTAGAATTTTTATTACTTCGACTTTTTTTTATTAATGGCTAACCACCTAGTTTATAGCAGAAGTAATCGAAAATCGGAAAAGAGCAACCATCTTTTGTTTCATCAAGGATATTTTGCTTTTGGAAAATCATTCTTGTAATATATCAGGCATTTAAGTTTTAGTCCATCTTATAGGTTTGTTGATCACCACCTGTTATACTCATTTGGGAGAGACATAAAATATATCAAGTTTCTTTTTTGGTACCAAATATATTTGTCATTTTCTGCTTTTAACAAAAGTGGTATCAAAACAAATTGAATTTAGATGCCTAAGTGCATTTCATTTAACTTGATTTGAACTATTATATCTAAACCTTTGTAATTTGTTTGTTTATCATGCATGAGGGATACTATGCTGAAATATGGAAAGAAAAACTTGATTCTGTAACTTCTGGACTGATGTTTTCAGGCTCAAGAGAATTTTTAGTTTTTTTACTGGCTAGTCCTGAGGTCCCCTTACATTTGTTTGCTCATGCATTAATATAATGTAGGGTTACTGACTAGTGTTTGTGAGCGAAATAGTTAAAAACAATTAGATATGTTCTGTGCAGCAGTTTTGTCTTTGTATGTTTTGCAGTTCAGTTAAACTACTGAAAATTGCGATCCACATATTTATTTACTGAATTTTGAAAACGTTATTATTGGAAGTGTATATACCATCTATCATACTGTATGCAGGTAGAGGGTGTGTCTACTTACACACTCCACCAAAATTACCTTTTCAATTGATGCTAAATGTATGCATGTATGCATACACACATATGTATACTATGGCTTGTATAGATTTCATATACGAACAATTTCTATTCTTGAAATCCCCATTACATCCAATTCAATAGTGAAAATAGGAATTCAAACTGTCTTTTTGTCTATCAAAAACACCATCTATGTTTTCTCTGATATTGATTCCATTAACTGTATAGGGGCCTGTTTTGATGTAATTAATGGTGGGACTTTGTTGCGTATATACAAGTGTTAGGATCTATAATGCAAACTCCATTGTGATATGGCACAATCTATACAAACAAGTTTGAACTGTAACTCTTGGTCAAATAAAATGCTACATAACGGTGACACCATTATTCTATGATTTGCTGCAAACGATCGTTGCAACTTTAAAACTGTACTTAATGTATTCTTGATGCAACACATTTGCAGGTAAGGGCACTTGAAGAGCAAGCAAATCAACATTTATACAGCTTGTAGTTAATGCTCTTGAATTGCGATGGATATGCAAACAAATTTTCTCCAAATAACCTACAAACCAGAGATAACAAACGGGAAACCTATACACATCTCATCAAATGCACTTCCATCTAAGGCATCAAACTACGAACCAGCTGGTCTTTCCTTTCATCTAGCCGCCCTGAAACTCTCTGGCTACAACAACAAAGAAGACAAAGATACAGACACAGACGACCAAAGCGTGAAATCAGATGACAGAGACCAAACTTACATCCCATCCTCAGAACCCTACACCAAAAACAAAAAGAAAGGCAACGACAAAGACGATAGCAAGCAACAAGATCACTATGCACTAATAGGCCTAGGGCACCTACGCTTCCTAGCCACCGAAGACCAAATCAAGAAATGCTATCGAGAAACCGCCTTAAGGTACCACCCCGACAAACAAGCCTCACTTCTTTTATCAGAAGTGACCGAAGAAGCAAAGCAGAAGAAGAAAGACGAGATAGAGAATCACTTCAAAGCAGTTCAAGAAGCCTATGAGGTGTTAACCGACCCTATGAAAAGAAGGCTGTACGACTCCACTGATGAATTTGACGATGCTATACCGACTACTTGTGGGCCAAACGATTTTTTCAAAGTGTTCGGGCCCGTATTCATGAGAAACGGTAAATGGTCGGTGGCCCAACCCGTTCCTAGTTTAGGAGACGAGGGCACACCATTAAAGGAAGTCGATGGGTTTTATGATTTTTGGTATTCTTTTAGGAGTTGGAGGGAGTTTCCTCATGCCGACGAGCACGATATTGAGGAAGCAGAGTCTCGAGATGAAAAGAGATGGATGGAGAGGCAAAATGCGAAATTGAGAGAGAAAGCTCGTAAAGAGGAGTATTCCAGAGTCAGGAGCCTTGTGGATAATGCTTATAGAAAAGACCCTAGAATACGTGGTAGAAAAGAGGCGGAAAAGGCGGAGAAATTGAGGAAGAAGGAGGCTAAATTGATGGTGAAAAGAAAGCAAGAGGAAGAGGCGGCAAGGGCAGCCGAAGAGGAGAAACGTAGGAAGGAGGAGGAGGAGAAGAAGGCAGCCGAAGCTGCTGCTATTCAGAAGAAGAAGAAGGAGAAGGAGAAGAAGCTTCTGAGGAAGGAGAGGAGTAGGCTTCGTGCACTTTGTTCGAATTCGGGTGTTTCGGTTGATGATGTCGAGAGCTTGTGCATGTCGCTCGATATGGAGAATATCAAATGCTTGTGCGATAACCTGGAAGTGATAGAAGATGATAGTAAGGTTAAGGAGCTGAAACTTGCATTGAGTGAAGGAAACACTTACACTTCTAAAAGTTCAAATTTGAATTTAAATTCGAATTCAAATGGGGATGCGAATGGAAATGTAAATGGTGAAGAGGAAACATGGTCGGATGTGCAAGAAAAGGAGCTTTTTGAGGCGTTGAAAACGTTTACGACAGAAGATGGGAAATGTTGGGAAAAAATTGCAGCTTCTGTTACGGGAAAAACTGTTGGTCAGTGCAAGATGAAGCTTGAGTCGATGAAGGAGAATTATAGAGGGAAGAAAGAAACCTGACTGAGGTTAGAGGAGTAGAGATTTGAAAGTGTGCTAATTTTACTATAAAGTTTTATTCTTCAGTATTCATTGAACCTTGTATTGGTCTATTTGGAGATCCTTCCTTTGTGCCTTGATTCGAAGAAGCTGCTGTGCTTTGTGTGTTTCAGGTGAAGATGGGTTAGGGAGGTATTTCCGTTTTTGGTTTTATCTTTTATATTTTTGTATGTTGAATGTAGAATGGACTCCTGTTCTAGGAAATATATTACTATTTGGGGTTATATGATTTTACCGGGACGCTTTGTGATAATAGCGACTGACTATTTTACATCTGTGTTTGCTTCGTTGCTTCGTTAGCAGTACTGTACGCACTTTGTATTTGAGCGCATGAAATACTGTGAAGTTGAAGAAAAATTATAGAACTACCAAATTTTAATTTAT

Functional annotation

Database	accession number	e-value	annotation
nr	AMD40258.1	5.6e-123	gonidialess A related factor
Swissprot	Q6NWJ4.1	1.8e-49	DnaJ homolog subfamily C member 2
trEMBL	A0A125RM40	4.0e-123	Gonidialess A related factor

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G06110.1	53.25	2e-122	436		DnaJ domain ;Myb-like DNA-binding domain

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC5G06970	AT5G06110.2	507	205	8	10	490	13	513	53.25	2e-122	436
AfisC5G06970	AT5G06110.2	56	28	0	455	510	607	662	50.00	2e-09	60.5
AfisC5G06970	AT5G06110.1	507	205	8	10	490	13	513	53.25	2e-122	436

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00226.28	DnaJ	Domain	101	180	62.5	2.7e-17

Gene Ontology

Accession	Ontology	Name
GO:0000122	P	negative regulation of transcription from RNA polymerase II promoter
GO:0001671	F	ATPase activator activity
GO:0003682	F	chromatin binding
GO:0042393	F	histone binding
GO:0051087	F	chaperone binding
GO:0006986	P	response to unfolded protein
GO:0005829	C	cytosol
GO:0005654	C	nucleoplasm
GO:0006259	P	DNA metabolic process
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0030308	P	negative regulation of cell growth
GO:0030544	F	Hsp70 protein binding
GO:0031965	C	nuclear membrane
GO:0043130	F	ubiquitin binding
GO:0044822	F	poly(A) RNA binding
GO:0051083	P	'de novo' cotranslational protein folding
GO:1900034	P	regulation of cellular response to heat

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09522	DNAJC2; DnaJ homolog subfamily C member 2	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network