result

Gene information

Detail information of AfisC6G00156

Location

Gene	Chr	Start	End	Strand
AfisC6G00156	chr6	21591922	21595657	+

Sequences

CDS

>AfisC6G00156
ATGCTAGCAATTTCACCTCTAACAAGTTTGAACAATGGTGATGCAACAGAAGAGTTTGCACTTGATCAAGAAATCAGCTTTGATGACTTGTTTGTAGGATTTGACGACCTCCCCGATCTTGATCAAATCGATCCTTGTGACATATTTGCTGATTTTTCATTTACTAGTGGCGAGGATGGAGATGGAAATAACAAGGATTCTTCAGAAGAGAATGGAGATAAAAAAAAATGTTTTGAGGAGTCGAGTAAAGAAGAGGCAGAAGTCGTGAGTGGGAGAACAAAAGAAGATGAAAAGAAATCACCAAGGAAAAAGTCATCGACCAAAAAGTTGTCTCAATCCAAGAAGAAAACTAAGGTGGATTGGACGCCGGAGCTGCATCGGAGGTTTGTTGAAGCAGTGGAGAAACTAGGATTGGAGAAAGCGGTGCCATCGAGAATATTGGAGCTTATGGGCATAGATTGTCTCACTAGACATAATATTGCAAGCCACTTACAGAAATATAGGTCACACAGAAAACACATACTAGCAAGAGAGGCAGAAGCAGCAAGGCTGGGTCAGAGAAGGAATATGTACGCAACCGGTGGAAACCATAGAGGAGGTGTCGACCCTACGATGATAAGCCCAAAGCCTAATTGGGCCCCATCACCACAACCGATGGTCGGATTTCCTCCTACGACACACCATCATTATTTGCAAAATTATAGGCCGTTGCATGTGTGGGGTCACCCTCCAGCAGTCGAACATCCTCCTCAGTTACTTTTTGTCTGGCCTAGACCGCCTTATTGGCAACATGGTCAGGCATATCAAAGGTCCTTGGCACAAGGAACACCATGCTTCCCTCCTCCTCCTCTATTGCCACCAACGGGATTTTCTTCTCCATCTGTTACTGGAATTCCTCCACATCGTATGGTTAGACCACCGCTGCCGCAATATGGAGCTCCTTTGAAAACTCACTCGACCTCGCATGTTCAACTTGACGTTCAACCATCAAATGAAAGCATAGATGCAGCAATAGGAGATGTATTAGCAAAGCCATGGTTGCCGTTGCCACTTGGATTGAAGCCGCCATCATTGGATGGTGTAATGGCTGAGCTACACAAGCAAGGTGTTGCTAGAGTTCCTCCGACTTGTGTTTGA

Protein

Gene

>AfisC6G00156
ATCCTTATAAAACACCCATCCAAGAGATTCATAACTCCAGTTAATTTATTCTAATTTGGATTAAAAAAAATTCTTTCCTTTTTCTTTATAATCTTGCATGCAAATCTAATATATATTCTACGTACAAATTTAGCATGCTAGCAATTTCACCTCTAACAAGTTTGAACAATGGTGATGCAACAGAAGAGTTTGCACTTGATCAAGAAATCAGCTTTGATGACTTGTTTGTAGGATTTGACGACCTCCCCGATCTTGATCAAATCGATCCTTGTGACATATTTGCTGATTTTTCATTTACTAGTGGCGAGGATGGAGATGGAAATAACAAGGATTCTTCAGAAGAGAATGGAGATAAAAAAAAATGTTTTGAGGAGTCGAGTAAAGAAGAGGCAGAAGTCGTGAGTGGGAGAACAAAAGAAGATGAAAAGAAATCACCAAGGAAAAAGTCATCGACCAAAAAGTTGTCTCAATCCAAGAAGAAAACTAAGGTGAAATCATATATTCTAGGGTTTCTAGTATTCTTGGTTGCACTGATTCTATTTTTTAATTCAAGTGGATTGCATATGATATTTTTTTTCTTTTAACTTTGGCTGATATGTATATATGTTTAAGAAAATTGAGCATTTTACAACCAACTGTCTACTACCAGTAGTTATTTGCAATTTAATTAAAAATTAATTAATAGAAATATTTTAATTATACTCTACATATCTGAAAGTAAATATATAATAATTGATTGTTGTGTTTTATACATAGGTGGATTGGACGCCGGAGCTGCATCGGAGGTTTGTTGAAGCAGTGGAGAAACTAGGATTGGAGAAAGCGGTGCCATCGAGAATATTGGAGCTTATGGGCATAGATTGTCTCACTAGACATAATATTGCAAGCCACTTACAGGTATTTTAATTCTACATCCATGAATAAACAAACTTTCAATTTTCTTCAAGTACATAACTCTTGACTGAATATTCTAAAATATCAATCTTGGAGTATTACTTATGTAGCTAGCTCACTGGTGTAATTTCCAGGTTTAACTATGTAGCTCTTCTAAAATATAAACTTTAAGTAAACTTTTGAATTTAAAGTTGTATTTCAAAGGAGTTCATTCATGTGGTTATTTTTATTGTTATATGTAGCTTCATCAGCTTTGAATACAATTTATTTAGTGTACAAAATACTAACATACGTGCTCTTTAATTATGATTAATACTTGGACAAATCTTAACTCAACATTTTATTTGAGAAATATCTTATGTCCGTTGTTGAATCTAATTTCCTGAAGGATTTTGTTTGGTGTTTTGGCGTATAAAATGTTTGGTAGCAATCTCTCTCATGCATCCTTAAAATAGAAAAGTTCATATTTATGTTATTGGACAATACTGAGTAGCATGTACATAATGATCGAGCAACAAGGAACCATAAACAAAGATTGAATTATAACCAGTAGTTCAAGTGTGTACATATATTTCTCATGCACATTATTTTCCTACACATATATAAAGGCTACAACCAAGATTTAACTGTGAATGAAATGCAGAAATATAGGTCACACAGAAAACACATACTAGCAAGAGAGGCAGAAGCAGCAAGGCTGGGTCAGAGAAGGAATATGTACGCAACCGGTGGAAACCATAGAGGAGGTGTCGACCCTACGATGATAAGCCCAAAGCCTAATTGGGCCCCATCACCACAACCGATGGTCGGATTTCCTCCTACGACACACCATCATTATTTGCAAAATTATAGGCCGTTGCATGTGTGGGGTCACCCTCCAGCAGTCGAACATCCTCCTCAGTTACTTTTTGTCTGGCCTAGACCGCCTTATTGGCAACATGGTCAGGCATATCAAAGGGTATGCATACCTATCAAAATAACCAGAGTAGGGGTACACTTAGTATTTAAGAAGCTCAATGGTTCAAAGCACCAATGGGATTCAGCCATTTTCAGATTGCTAAAATGTACTGGTACTCTGAACCATCGAGTTTCTGATCTAGTGGCCCAGAATATTTGACGTATGGTGCTTTGGTTTTCCACCAAAACATATGTCTAGGCCTATACGATTAATGACTAACAAAAATATTTGTTTTATGCAGTCCTTGGCACAAGGAACACCATGCTTCCCTCCTCCTCCTCTATTGCCACCAACGGTACTGATTTTTTTTCTCATTTTCTGCTTGATTTAACAGTGCCGAGAGAAAACTTTTTTTCTTCAACTAAGTGAATTTGGTTTTACTTGTGTTGAATTGTCTACTCTGGCGTAATACCAGTACTGTGATAAGCTTTCGTATATGAACCGCCACACTTGTTAAATGTTAGTAACATATGTACAAGTTTACGACTAATATATTGCATTAAGTGTGCTGCTAAGGGGATTCCTTCTGTGATATTGCACCAGAGTAGGCGTTACAAATCTTTTTTTGTATGCCCATCACAATAATATTTGTTACTATTCTAGATGATTTTATTTGACTGGACTATAATTATATAATGCAGGGATTTTCTTCTCCATCTGTTACTGGAATTCCTCCACATCGTATGGTTAGACCACCGCTGCCGCAATATGGAGCTCCTTTGAAAACTCACTCGACCTCGCATGTTCAACTTGACGTTCAACCAGTAAGTGAACCTCATACATATATACATGTGTGTATGTGCACGCACGCACGAGTGTGCTCGCGCGCATGCGCACACACACATACACACACACATATATGATACACACACATATATATGATATACACTTATATACATGACATACATATATACATACTACACACACGTTTGTATGTATGTATGTACACACACGCACATGTGTTTGTGGCGATCATTAAGTTTGAAACAGAGGAGCAAAAATTCTTTTGCAAAGGCATATTTGATAATGAGTACAGACTTTTTTTTGGGGGAGTTTTGGTTAGATTATCCATTTCAGTAATGTTGCATTCATGGGGTACATAGAGTAAGGCGACACATGAGTAAGAGCCAGATTGTATGGCATAAATTCATACAGCATGTTTCTGGTTTTAGCCTTTGGAATTATCACAAGGAGGCAATACAAATTAATTGCACTAACATACAAATTGTTCCTATGGTTGTATCTTGATTTTTACCCCGTACACCCTTTTTTTTGACACTATTACCAGTTATTTTTGATGTGTTAGATTATGTCTCAAAAGTTTTAGTTTAAATATCAAGAACCTACATCCGCATCTGAATATTTCAGATATCATTATCAGATGCATTGACAATTGATAAATCTGAAGATACTAAAGGAAAATTTTAATTCAACGTAATTTTTTTTACATGAATTAAGGATGGTGAACGTTAATTGACAATTTTCACTATAATCCAGTCAAATGAAAGCATAGATGCAGCAATAGGAGATGTATTAGCAAAGCCATGGTTGCCGTTGCCACTTGGATTGAAGCCGCCATCATTGGATGGTGTAATGGCTGAGCTACACAAGCAAGGTGTTGCTAGAGTTCCTCCGACTTGTGTTTGAACTTAAATATGCACACACACTCTATTTTGAATGTGTGTGTTCTACTATAAACAAATAAAATTTGTCGACTTTTCCTTTTGTGTAGATATCGATGTACTTTTCTTGTTTCTTAATTCGGAATATAAACTTGTATGATAAGGAGTTAGTGAAAATCGTGCATTGTATTACAATGTTTTGGGGTTTGGAATAAGAACGCAACTGCATAGTTTATCGTTTCAAATTACATTTTGTTTTTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020247841.1	5.3e-78	LOW QUALITY PROTEIN: probable transcription factor GLK1
Swissprot	Q5Z5I4.1	2.6e-66	Golden2-like protein 1
trEMBL	A0A1D1Y9Q2	6.5e-70	Putative transcription factor GLK1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G20570.1	43.19	3e-59	225	ATGLK1;GLK1;GPRI1	GBF's pro-rich region-interacting factor 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G00156	AT2G20570.1	382	160	13	32	377	57	417	43.19	3e-59	225
AfisC6G00156	AT2G20570.2	398	160	14	32	377	57	433	41.46	3e-56	216
AfisC6G00156	AT5G44190.1	391	156	15	13	375	39	384	41.43	1e-50	197

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	119	168	33.1	4.1e-08

Gene Ontology

Accession	Ontology	Name
GO:0000156	F	phosphorelay response regulator activity
GO:0000160	P	phosphorelay signal transduction system
GO:0005515	F	protein binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0009409	P	response to cold
GO:0009414	P	response to water deprivation
GO:0009658	P	chloroplast organization
GO:0009910	P	negative regulation of flower development
GO:0010082	P	regulation of root meristem growth
GO:0010380	P	regulation of chlorophyll biosynthetic process
GO:0010638	P	positive regulation of organelle organization
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0031537	P	regulation of anthocyanin metabolic process
GO:0043565	F	sequence-specific DNA binding
GO:0080022	P	primary root development
GO:0080036	P	regulation of cytokinin-activated signaling pathway
GO:0080113	P	regulation of seed growth
GO:1900056	P	negative regulation of leaf senescence

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network