result

Gene information

Detail information of AfisC6G00190

Location

Gene	Chr	Start	End	Strand
AfisC6G00190	chr6	27241127	27246879	-

Sequences

CDS

Protein

Gene

>AfisC6G00190
ATGAGGTACATCACTTTTATTCATGTGCATTCTTTTTTATACTAGTGTGAACCCATGCTTCGCATATGGGCTGTAGCAATATTTTGTTTTTAATTACCAGTGTATCATTGTTGTTTCCCTGTAGAATTATCATTATGGTTGTAATTAAGCTATACATTTCACTTCATTTTTCTAATAAGATGTTTAAATTTAAATTGCTATTAAAATTTAAATTTAAATTGCTATATTTAATACACATTAAAGAATGAAAAATACTAAAATTTTTGAGTTTTTGTGATATAATCGCATTTGTCTATTTTAAGATTAAATTGTTTGACTTTGACAGTTTTCATAGCTAAACATGGAGCTAAAATATTATCCTAAGTATTGAATTTTTCTTATATTCAAAACATTATATTTTACCAACGTTTTACAGTAACTCATTGTAAAGATCAAACTATTTCTCATGCTTAAGCTTAAATTATTTCCCTAGTTATATTTATTGAATTCAATTATAATTTGTTTGCAAAGCAAACACTGTGATAATCTAAATGTATACATTCCTAAAGAAAAGGCAACTAATAGGAGGGTTGATTCAAATCTCTTAACATTTCAAAGAAGCAGGCAAGAGAAAACCTAGCGAAACTAAAACTCAAAATAATCCCATCTTAATGTAATCATTCCAAGCGGTAAATATCATTATATTTGGCAAGCATAAGGTGGCAAGATGATGGTAAGAACTGGATTTTTATTTTTATTTTTTAGCATCATAAAGTTTTTGCTACATCTATTATATACATACATGTAATGTAATGACGACAATTTTACAAAATGGAATAAGTATACACCTATTTATTAACGATGCTAAAAGAAAATTGTATTTTTGTCTATGTTTTTTCTACGTATATAGATATTAAATATACACAAGCAACTGAATGACTCTATACTGTAGTAATGATTATGACAATACCCACCGCGTCTCTCTGCAAAATATGAAAACAAAAGTAAATATAATTGTGTTAAATACAAAAAACTATTGAGTAACACACAGAGAAACACGAAATTGTTATAGCTACAGTTTGATAAAGTCCTCCGTGATTTGGAATTCAATAAAATTATATAGTAGATTCAAAATATACATATTCTCTAAATAGATAGAGCAATTTCAAAAAAAATAACCATATTAGTTAGACTGAATTTGGGTAATCCACAGCCAGGCAACTCTTTAGAGGCCAATGTATGTGAATGCTTTGTATCAATAAAAATTGAGGCCACTGTACATAAAATAAGTGAATATTTCATATCAATAGAAATAAACTTTACAAAAACATAATGTAAAGCCCCTTATGGTGGAAGCATCTTTGTTACGCACATATGGTAGTTTGTTACCTTAGTTCTTTATTACCTTGGTTCTTCCCGTCTCCTCATAATTGTACTACACGCTTTGCATCGTGCATCGGTATACACGTTTTATTCAAAAGTAATTTGTCCCACATCGTCAAATATACATTAATTGTAGTTGTATATAAGCTAAGGGATGAAGAAAGAGGTTGTTCCAATGATATCTAATTGAGTTGAAATGATGTCGTGAAGTTTATAATATGGCCCATGAACGGATGACATGAGGGACAAATAATTTTAGCTACTATTGATATATAAAGGATATTTTAGGAAATTCAAAAAGACACGGTTGAATCCTATTCATGGAATTCTCATTATTAATAGTAGAGATTTACAGGATTTGGTTAAAAAGTTTTGCTGCTTCAATGCTTTTTATAGACTGAAATATTAATTAGCCGTGCTTTTTCATATAATTACATAGCTACAATTTTATTGCATGTAAAGATAGATTCAAACTCTTCAACATGTTGCACATAGAATTAAAAAAAATTGTTGTAATAAATTTATTGCTGTGAAAAAGTCGACATAATCAGGTTGTTGATATTAGAGACCACATGGCTTAAATTATTTATTTGATAGGGAAGTATAATTTATTGTTAAAAAGTAACATAAGTCGATGCCATATCAATACTATTATCATTCATGTTACATGCAGTTTATTGTAAAATATATATAGTTTTTTCAATATTTCTAATTTAGTTATTGATTTTTTTGTAGATATTCCCAAGCCATAGCGGTGACAACAGGACTCACTTTTTCATACACTGGACAGTAAGTAGTACATCATGTATCTATACTCACTAAATTAGGGGAAATGAAGTAATTATCTCAATAAAAATATCAAAATACTATATGTTGATTAAAATGTGCAGTAAAAGTTGATCTTCGTATTCAATATAGATAGTATATAAGTTAGAATATGTGTGAGAGTCTATCCCTTTGCCATTGTGTACCATGTATTATTACCATTTGTTAATCCTATATTAAGAATATCTTCCTTCTTATATGATGTTGCCTATGCTGAATATATGCAGATTTTATTTTATGGTATTTTTTTAAAGAAAAATATTCTACTATACAACACTTTGTTTTTTTGAACCAATCAATACTGGAATTGTCATACGATGGTAGTTTTTTAATAGAAGGTTACATTTGACAGTTGACAGCATGTTATGCTTGACTTGCTAATATTTTTCCTGTAAACATACTCTTAATATTGCCTTTATATATGTTCTGTCTCTATCCTTTTCTGAAATCTCCGTATCAGGGAGGCATTATTTTCTATACATGTGTATTGCGATAGTATATACTTAATAAGGCTTTGGATGTTATTTGCTGCACATGGATACTCAAAGCTGCTTTCCAAATGATGAATTGAAGATTATATCTCATGTTAGCATCAAATTAAAAAAGTTCAGCATTACACGTATCTGTATATATCATGTTTTGTTATATTTTCAATGCAGGTCAAAACGATGCTCAAACCATGTGATATTGTTAATGTCTTTAGAACTTAAAGTTGCTAGAAGTGAAGGTTATAATTTTTTTAGCACTTATGTTTTTCCATTATGTTTGAACATTTGGTTAGACTAAATGTAAATATTACTTATATAATACATCCTCCTTTTTTGGTTCAGATTTTTAGTTGAAACATTGACTATAAATTACAAGAACCTTTAATATATTTCCGACATAAATACGATTGCACGTATATAATTCTGTAACTTGATAGTACATGAATGAAATTAATTCTCATCTTTATTTGTTTGAAAGTTGATATTTTTGCAATAATTATAAAAATTAAAATTAAATAAGTTTTCTTACATTAAAATAATTAAAATTTACTAAGTTTATAAAAATTAACTAAGATAACTAAACTTAAGTTTTATAAAAATCGTGTTCTCTATTTTGAAATCATTGTTAATTTGTTATAAAAATTGACTAAGTTTTACAATGATTAACCAATTTTTATAAAAATTAACTAAGTTAACTAAGTTTTGTAAAAATTAACTAAGTTTATAAAAATTAATTAAGTTTATTATTATAATAATAATAAATTAACTAAGTTTAAAATAATTAACTAAGTTAATTAATTTTTATAAAATTAATTAAGTTTTATAATAATTAACTAAACTGACTATTTTTTTTTAAATTAAATAAGTTTACAAAATTTCTAAGTTTTATAAAAATTAATAAGTTCATAACAATCGACATGCAATTATTGAGTAAAGCATTTAAAACGAAATATAACATTAACAAAGTTATCTAAATTTTATAAAAATTAAATAAATTTATAAAAATTAACCTAGTTTATAAGAAAATAACTAATTTTTATTGAAGTTAACTAAGTTTCATAGAAATTAAGTAAGTTTAAGTTTTCAAAATAAACTAAATTTGTAAAAATAACAAAGTTAATAAAATTTAACTAAGTTTTATAAAACTTGACTAAGTTTTATAAACATCTGCTTAAATTAATTAAGTTTGTAAAATTTAACCCAGTTTTATAAAAAGCTAACTATGTTTTATAAAAATTTAATTAATTTTTGGAAAATTAAACTAAGTTAGATAAATTATAAAAATCAACTACATTAACCAAGTTTTATAAAAAGTAAATAATTTTCTACCTTAAGTAAGTTTTAGAAAACTGAAAAATAAATTTATAAAAATTAACCAAGTTGTATATAAATTAAATAATTATCAGAATATTGACAAAATATAACTAATTATTATAAAATTTAACCAAGTTTTATAAACATCCGACTAGATTAATTAAATTTGTAAAATTTATCCAAGTTTGATAAAAAAATTAATTGTGTTTTATAAAAATTTAACAAAATTAACAAAGTTTCTATAGAATTTATTAAGTATCATAAAGATTTCTAATCCAACTCTAAAACATCATAAACCTCCAGCATCTTCATTAAGTACCTTTAACTACGTAATTTGTTATTGCTGAGATTGTGGTAGAGGAATTAGAGGAATTGTTGTTGAGATTGTGCTAGAACTAAGATTCTTTATCTATCAGTATGGACTTGTCTATCACTTGAAGCTAACACAAAATGCTAAAAGCATTTTGGTAATTTCATTCTTGAATTATTATTTTTTTGGCTTCATCATGTGAAATGGTAAATATCACAGTTTATGTTACTGAATTCAAGTTTATGGTATGTCATGGGTTATGATTTTTCTTATTTGATTAGTTGCTCCTACTGGACACTGCATTGCATTTATTTATGAAAATAAACTCAACCTGTTCTGATTTATGATATATATGAAGCAACTGACATGCAAATAGTTATTTAATTATATATTGTAATAAAATTAGGTCCACTAATCTATTAGCATTTTTTGTTTTATATGCAGGAAATGGCTTCTTTAACTGAATATATTTAGACGTGATGGTTCACAATCTTATGAAATATCAGGTAAGAACTAAATATATTTATCATGTTCATAATTAAAACTGTGTACTATGGTCGTGTATATATAACTGAAGCATTAAAACTATGGTCATGTATATAATGCTGCTTTCTCTACTCCGTTTGTGGCCCCGGACGAGTACCATAAGTTCGCCAATGGTGAACAACGGAGGTTGGATGGAGATGAGGTCGCAGAAGCTATCGTGAATAGAATTCCTTTGAAGAGAAAGTCTGATCGAGAGAACACTAAAGTTGTAGCATCAAGTGAATGGGTAACTAGTCTAGGGTATGCTGAAGCAGTTAATAGTCCTTTCCTAACTCCAGCAAAAAATGTTGGGGCCTGTGGAAAGTTCAAGGCAAAAACTTCCAATAGGACGGTTCCACAAACACCTATCTCAAATGCTGGTAGTTCTCCTTATAATAATAATCTCACGCCAACTGGTAACTGTCGCTATGATAGTTCATTAGGTAAGTTAACTGTGACATTTGTATTAATATCAAGTGAATAATGGTTTCCATGACGATTTCTGTGCATTGCTGATGTGTATTTCAACTTTATAGGTATGCTAACCAAAAAGTTCATCAATTTACTTAAACATGCTCCAGATGGTGGTCTTGGTTTGAATAATGTTGCTGAAACTCTAGAGGTAAAAAGAAAATACATAATCCGTTGGTGTTGAAGGGGGAAAAACTAAAAAAAAAATTGTTATTCTTAGAGAGGCAAATCCCAACATAGACTTGTTACTCTGTGAGGGTAAGAGAGTGAGGACACTGGAAGTTAACATTCTCTTGGATAAAGAGAAAGTAAAAGTTGGAGTCCTGTTAATCGTCTTTTCTGATCCTATATTGTATATTTTTTAGGTACAGAAAAGGCGAATATATGACATTGCAAATGTTTTAGAAGGAATTGGACTGATAGAAAAGACACTCAAGAATATAATACGGTGGAAGTAA

Functional annotation

Database	accession number	e-value	annotation
nr	OAY76505.1	3.3e-48	Transcription factor E2FA
Swissprot	Q9FNY0.1	2.6e-34	E2F transcription factor-3
trEMBL	A0A6P5H041	2.4e-48	transcription factor E2FA-like isoform X1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G36010.1	53.90	6e-36	147	ATE2FA;E2F3	E2F transcription factor 3

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G00190	AT2G36010.1	154	68	2	65	218	81	231	53.90	6e-36	147
AfisC6G00190	AT2G36010.3	154	68	2	65	218	81	231	53.90	6e-36	147
AfisC6G00190	AT5G22220.3	177	65	5	55	218	29	193	49.15	1e-31	133

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02319.17	E2F_TDP	Domain	156	217	78.4	2.7e-22

Gene Ontology

Accession	Ontology	Name
GO:0000122	P	negative regulation of transcription from RNA polymerase II promoter
GO:0000790	C	nuclear chromatin
GO:0000978	F	RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001047	F	core promoter binding
GO:0001077	F	transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0001078	F	transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0002064	P	epithelial cell development
GO:0016020	C	membrane
GO:0005654	C	nucleoplasm
GO:0005730	C	nucleolus
GO:0006367	P	transcription initiation from RNA polymerase II promoter
GO:0006884	P	cell volume homeostasis
GO:0006977	P	DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest
GO:0007113	P	endomitotic cell cycle
GO:0009887	P	organ morphogenesis
GO:0007444	P	imaginal disc development
GO:0008015	P	blood circulation
GO:0008134	F	transcription factor binding
GO:0008156	P	negative regulation of DNA replication
GO:0008630	P	intrinsic apoptotic signaling pathway in response to DNA damage
GO:0009733	P	response to auxin
GO:0010090	P	trichome morphogenesis
GO:0016528	C	sarcoplasm
GO:0019760	P	glucosinolate metabolic process
GO:0019904	F	protein domain specific binding
GO:0030900	P	forebrain development
GO:0031523	C	Myb complex
GO:0035189	C	Rb-E2F complex
GO:0042023	P	DNA endoreduplication
GO:0043276	P	anoikis
GO:0043392	P	negative regulation of DNA binding
GO:0044458	P	motile cilium assembly
GO:0045599	P	negative regulation of fat cell differentiation
GO:0045944	P	positive regulation of transcription from RNA polymerase II promoter
GO:0046982	F	protein heterodimerization activity
GO:0048146	P	positive regulation of fibroblast proliferation
GO:0048255	P	mRNA stabilization
GO:0048477	P	oogenesis
GO:0051446	P	positive regulation of meiotic cell cycle
GO:0051782	P	negative regulation of cell division
GO:0071930	P	negative regulation of transcription involved in G1/S transition of mitotic cell cycle
GO:0070345	P	negative regulation of fat cell proliferation
GO:0071466	P	cellular response to xenobiotic stimulus
GO:0072332	P	intrinsic apoptotic signaling pathway by p53 class mediator
GO:0098534	P	centriole assembly
GO:1900740	P	positive regulation of protein insertion into mitochondrial membrane involved in apoptotic signaling pathway
GO:1903251	P	multi-ciliated epithelial cell differentiation
GO:1990086	P	lens fiber cell apoptotic process
GO:1990841	F	promoter-specific chromatin binding

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network