result

Gene information

Detail information of AfisC6G00550

Location

Gene	Chr	Start	End	Strand
AfisC6G00550	chr6	77042943	77046964	-

Sequences

CDS

Protein

Gene

>AfisC6G00550
ATGTACATGCGGAGCAAAATGGTTAATTAAGTTGATGTGTGCTCTACACGTATAAAACAAGAAATAAATCATACAGTTCATGTTAGCTTCTCATATGAAAGGCACACCATTTAGTACAAACTGCACACGTTCCATGGGTGACAAATAGTTACAGTTTGAATTTAAAATCATAAATGTCAATTGAAATGTAAACTTGTATAAAAGTTCAATATAAGCCTAGTATTATGACAGTTCCAAATATATTAAAAATATTGTTGTACTATTGTTTTGTCTTCTTCTTTGCCAATCTTGACATCGACGTAAATAAAAATAAATATTATATATTGTGCAATTTAAAACGTGTTTAAATAATATTTTGACTAGGTCCGTCAGCGGATACTTTCGGATACGAATAACGTCATAACTGCATCAGCATTCAAAACCGTCGTTGGATATCGGATAATCATATCCGTGGATATGGATAGATATCAGATAATTATTATATATGCTAAAGGTCGATAAATAAAGCTGTATAAATTGAAATTTCCTATTTAACACAATTTTTTTTTCCAATCCCATTAAATATAAAAATCTAAAAAATAAAAAAATGATAATATTAAATAATTTTGAGCAACTAATATGGATAAATTAATGCATGTAGTATAAACTACCAGGTTAATAAAACAACAAATACACATCCATATTCATTTCAGATTTTCCGGATATCTGTTATTCGCTTTGCATGTTAGATGCGCACAGATTTTAGATTTTTCAGGCATCCGTTGATAGACTTAATTTTGACGTAACTCATAATGTTAAGCAAGATGTTAACGTAAAGATTACGGTTCTACAACCAACACATTTGGCTTAGTTAGTTGGTAGTTTAGACTTTAGACTACATCATGGGTTCGATCCACAAGATCGACGTTAGTTGACATTAATAAACCATGTTAAAAACCGTGGTTCTATTCAATAGACGCAACTTCATATTTTGTCATTGTTTGTTAATTATTAAAGTAAAAAAATAACTGTATTGGAGATTTTTACATATTAGATTGAGAGTCATTACGAAGTTTTCTATTTAGTGTGAGTTCAACAAAAATTGTTTTGTAATAGAAAGTGTTTTGAACGGAACTCGTATTTATTCGAAATAATCAAACTTTTCTTTTGTCATTTTCATTTGAACAAATATATAGAATTAGTAATGTTCCCGAAATATGGAATTCTATAATAAAAAAATGTAAAACCATATATACATAGGCACATATATAATCTTAAGTATTCTAAATAGCTTTTAGAAAGAGAAAATTTTGATTATCATATAAAATGTTTCCCTTTCTTTCGGAAAATTTATTTTCTATATGTATGGATGAAATTTTCTTTTATTTTGACATTTTCACCAAGTGTGCTAAAACAATAAAAAGGAAAAATAAAGTGTGAGTTATAGTTAAATCTAGAATGAACGAAGATTACTATTGATCTATTGATGCTAAGAATGTAAAAACATTATTTTAAAAAAAGATAAAGGAATACATGTGAAATATTGTCATTGTTTGACATGTAACCCTAATAATATTCCAGTCTTACCAAATAAAAACGGAGATCGATTTTTATTGTAACCAAACTTCATTGGTATATTATAACGATGACTCGGATAATTCGTAATCAGACCAAGAAACCATATATTTATGATGGGACCTTTCGGCATGTGCAATGCACGTGCATATAAAATGCCTATGCATAAAGATTAAAAATTATTGTATTCAATTTTATATAAGTTTTAATAAGCATATATTGAGTAATATGACAAAAAAATACTGAAATTTTTGTTTAGATTTAGATTTGAACTTGTTATATTATTTTCACTACACCATAACAGCCATTTCGTAACACTTATTTTTTTCAATTGCCAACACTTATCTGCGTTGTATATTAATCACAACAATAAGCGTTGCTAAGTAAGAAATGTGTGACCGAAAATACATAATTACATTTTTTTTCTTGTCCACGCATATGTGCGTTGCCAAATTTGGTAAAATTGAAACTAAATGAATGTTTTTGGGGCAAAAAAGTAATAAACATTCTTTTTCTTCCACAACCCTAATCCAAACGTCTAACATTCATTCCCCAGCTTCAGCCGCAAGAATTTTCCCCAACTTTGGAAATTAGGGTTTCTAATTCGAAGCTTCCAATTGATAATCAGATGAGATAAATTCACATGTGTCCCTTGTCACTTTGATTGCTTGATTGTTGCCTCTCGGTAGCTTCGACGTCGAGTGAGATTGATCTAGAATTCGATATATATTCTTCGATTTATGCTTTTGATTTTATGCTTTTAATTCAACTTGAGTTTATGCCAATGATGAATTAGGTTTATTTATAGGGTTTGATTTTCGATATATTAGTTTGCTTGAATTTTTCAATTGCTTTCTTTTTACGTTCGATTTATGATCAAATAATTTTTCAGTGGTTGACTCGTTATTTATTTTGATATAAGTGCGAATGTATAGACTTATATATCTAGACCCATGGTTGCATTTTTGGCCTTGACTTTGACTTCTTCTTTGATATTTTTGATGCTTTGTTTCCTTGCATTGTACATGTGATCTGCTCCACTAAGACCATGCTAAGGTGCAACTTCAATATGTATAATATACTAGGGTTTTTAAGATTTTATTGCAAAAGGCCTTGATTTTCTGTTACAATTCAGTGTTAAAATTCATATATATTCATGAAATAAGCTTAAATCTGTGCAGATCTGACAGATAAACAAAGTTTGTGTGTAACTAATTTTTTTTGAGAAAAATGTTATTTAAGTTGCACTGACCTTTTCTCTCCTTTATGTGTATATACATTGTGAAATGAACAATAATCTTTTATTTAACTGTGTATTGTAATTATCATAGGTGGATTGGACTCCGGAGCTTCATCGGAGATTTGTTCAGGCAGTGGAGCAACTTGGGGTAGACAAAGCAGTACCATCCAGGATTTTAGAGCTCATGGGAATTGATTGTCTCACAAGACATAATATTGCAAGCCATTTACAGGTACACCTAATTTTATCTATATGTAGTTTTGGATAAACTTCTTCTTCTTCTTCATTATTTTTTGGGTTTGTTTTATTTTTATGATTTTGATACCATATAGAGATAAGCTTATCTGTAATATATTTAAAAGTATTCTCGTACATATGGTATACTAATTAGTTCACTGATAATAAATATTGTTGTATATCTAGCAACAATTTCTAAAAGTAAACTAATTTAGGTAAAAGCTGAGTGTAATTACATAAATTTTCCTGGATATATTACAGAATTTATATAATCTATTAACAAGGTCTTCTAAAACATGTAATTTAATCACGGTTATACATATCACATGCCAGATGCTTTTCTAAACCTGCACTTAATTTGATATTCAATCTTTTTACACACATGTACACCAACTTTTAATGTAAAAGCAATTGAGTTTTCCTGAGAAGAACAATCGAAAAAAACTATTATATGAGTACAGAAAATATATGGAAACTTCATGTTCAGTATACTAAAAAACTATATATATATATATATATATATATGAAATTCGTTAACTTCTTGAGGATAAGTACAAAGAAATATGACATCTACCAGTATAAGCATGCATTGACTGAAATTTGAAACTTGGAAGCATGTTACACTCTCATTTACATATTATATACGTAAGAACTCATAATTGTTGTTGAAGTACTAACAAAGTTTTTAAAAAAATTGAAAAACGAAACACAGAAATATCGGTCGCACAGAAAGCATTTGCTAGCAAGAGAAGCAGAAGCAGCAAGCTGGAGTCACAGACGTCAGTTGTACGTGAGCAGCACTAACAATGGAGGAGGAGGAAAGACGATGAACATGAAACCTAGTTGGGCCCCACAACCACAGCCCATGGTTGGATTTCCTCCAACAATGAATCATCCTCAACATCAGAACTTCAGACCTTTGCACGTCTGGGGCCATCCACAGGCGGTGGAGCATCCTCAGTTGGTTCCGGTCTGGCCCAGACCTCCATAG

Functional annotation

Database	accession number	e-value	annotation
nr	KAB2043481.1	2.8e-43	hypothetical protein ES319_D01G020500v1
Swissprot	Q5Z5I4.1	6.9e-39	Golden2-like protein 1
trEMBL	D6MK15	1.3e-45	Transcription factor (Fragment)

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G20570.1	59.86	8e-41	162	ATGLK1;GLK1;GPRI1	GBF's pro-rich region-interacting factor 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G00550	AT2G20570.1	147	48	4	4	144	152	293	59.86	8e-41	162
AfisC6G00550	AT2G20570.2	143	45	4	8	144	172	309	60.84	1e-40	162
AfisC6G00550	AT5G44190.1	123	36	2	8	130	150	264	64.23	2e-37	151

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	9	57	34.7	1.3e-08

Gene Ontology

Accession	Ontology	Name
GO:0000160	P	phosphorelay signal transduction system
GO:0005515	F	protein binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0009409	P	response to cold
GO:0009658	P	chloroplast organization
GO:0009736	P	cytokinin-activated signaling pathway
GO:0009910	P	negative regulation of flower development
GO:0010380	P	regulation of chlorophyll biosynthetic process
GO:0010638	P	positive regulation of organelle organization
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0043565	F	sequence-specific DNA binding
GO:1900056	P	negative regulation of leaf senescence

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network