result

Gene information

Detail information of AfisC6G00603

Location

Gene	Chr	Start	End	Strand
AfisC6G00603	chr6	90295319	90300268	-

Sequences

CDS

>AfisC6G00603
ATGATGGATGCGGATTCGGCTTCACTTATGGGAATTATAGATGAAGATCACGTGAAACATCAACAGCAGCAGCTACTTCCAACTCAAACCGAAAGTACCACTGCTAAGAAGAAACGAAATCTTCCTGGAACTCCAAATCCTGATGCTGAAATAATCGCACTTTCACCTAAAACCCTAATGGCAACGAATCGTTTCATATGCGAAGTATGCCAGAAAGGATTCCAAAGAGAGCAAAACCTTCAACTGCATCGAAGAGGTCATAACTTACCGTGGAAATTGAAGCAAAAGAGCACCAAAGAAGTTCGAAGAAAAGTGTACTTATGTCCTGAACCAACCTGCGTGCACCATGAACCGTCTCGTGCACTAGGAGACCTTACAGGGATCAAGAAGCACTTTAGTAGAAAACACGGTGAAAAGAAGTGGAAATGCGAGAAATGTTCTAAGAAGTATGCGGTGCAATCGGATTGGAAAGCACATTCAAAGACATGTGGCACTAGGGAGTACAGATGTGACTGTGGTACTCTTTTCTCACGGCGAGATAGCTTCATCACACATCGAGCATTTTGCGATGCACTAGCTCAAGAAAGCGCAAGACTACCATCGAACCTTTCTGCACTAGGAACCAACTTATATGGTGGCTGCCCGAACCCAACAGGAAACTTGAACTTATCACATCAACTCAACTCACAACTTCCTTCTTTGCAGTATCAAAGCAATAATTCCGACCTCCTCCGCCTTGGTGGCAATAGACCCTCCTCTAACTTCAACCACCTCCTCCCTCCCTCCAGTCCTTCCTCTTTTCACTTTGGTTCCAACTCTCAAGAGTTCAACAACAATAACATTGGTATCAACGTTGATGGTAATCAAGACGCTACCAATAACAACTTATTTCATGGTCTCATGCAACTTCCTCATCATCAAGATCTTCAAAGCAACAGAAACAACAATAACTCGTCGTCTTCTTCTTCTGCCGCTGCAAATCTCTTCAACTTAGGATATTATTCGAACGAGATGAATAATAGTGAAAATTCAAACCTGATGAACGATAATCTACCGATGTCAACAAATTTCAACAACAATAATTCTCAAGATCATGAACTCCCTCAAATGTCAGCAACTGCACTGCTTCAGAAAGCAGCACAAATGGGGGCAACAACAAGCGGGACTGGAGGGACGAAAATGGCATCAATCTTCAAACTACCAGGCTTCAACAGTGAGGAGAATGAAAATGATATGATTCAAACGCATAATATCAACGACATTATGAATTCGTTTGCAAATGGAAATAGCACTATGTTTGGAGGCAATTCTATGGGGTTCAGTTTAAATTCAGGTAGCAATATTGATCATGGTCGAGGTAAATTTGGTGCAAATATAAGTGATGGATTAACAAGGGATTTTCTTGGAGTTGGTGGCATTATGAGAAATCTGGGAGGTGGTGGTGTTACGCAAAGAGATGTGCAACAACATCAACAGCAGCAGCTTGATTTAGAACCTCAGTTTAAATCAAGTTCCTCTGGAAGATCATTTGGAGGTGGGAGCTTGCAATGA

Protein

Gene

>AfisC6G00603
TTTTTTTTTGTGGTAGCATACATTTATCCTATAAACATGTAAATAATAATAATGTAGTTAATTATAATATTGTAAATAATATTCTCAACGTTATCATTTCATTTAATGTATTCTTTTTAGAGATCTAAAATCTAACAGTATAGTATGGTATTGTAGTATCACTCCTCATCACAACTTGCAGGCATAGAAAATGAAAGGAGAGAAGGAGAAGGCAGATTAATTAAACTTTATGAATAATTGGTTTGTTTATTTTGATTTCTACTCTTCTATTTCCTCTTTCCTGTGTTTATTTCTACATATCTTTAGCTACCAACTGTTTTGTATAATTTCTGTCTATTAAAAGCTCTGAGTGCAACTGTTTGTTTTGATTTCCAAATTCTTTTGTTGTTTTGTCAATCTTGGAAGAATCAATATAGAGTTAGCTAGCATTAGCTATGTCTATATTGATTTGTAGGTTGGTGATTTAGTAACAAGATATTTATAATACAATTATTCTTCATACTATTTTCCTTAATTTGGTTCTTCTTCTTTGTCTTCTAGATTCATGGTGTTGTACGCTTTAGCCTAACCACTTCAGTTTGAGAGAACAAAAATCAAGAAAAGGGAGTTTGGTTGTTTGCTACAAAGTAAATATAATGATGGATGCGGATTCGGCTTCACTTATGGGAATTATAGATGAAGATCACGTGAAACATCAACAGCAGCAGCTACTTCCAACTCAAACCGAAAGTACCACTGCTAAGAAGAAACGAAATCTTCCTGGAACTCCAAGCAAGTTTTTCCATCGCTTATAGTCTTTTTCTTTTAATTATATATATTGAAATTTATTTATTCCTTTCATATTATTTTAGATCTTGATATAGTTCATTCAAAATCAATGATGATCTCAATTGAATGGATTGGTAGTATTTAGATTGCTCATAGCTTAACAAATAATATCTTAATTTTTATGGTTGGAGTTTTCTACTGTATTTATTTCTTTATTTACTATGAAATTAAGCACAAATTAACTTGATCGTTTGCTCTAGTTCTGTTGTAAGTAAAAATCTATATTCACACAGTTCTCTATTAAAGAAAATTATTTTCAGATTCCTATTTGCCTAATACTCAAATTTTAAATCGATTTCCAAAATTCTTTGTCCAAATCCAAATTCCATGTAACAAGACCTAACCATTGCTGATTTTCATCCAAATCTTTCATTTCCTTTATTATAAACTCAACTAATAATCAGTTTATTATAACGTGCATGTACTATATTTCATTGTAACAGATCCTGATGCTGAAATAATCGCACTTTCACCTAAAACCCTAATGGCAACGAATCGTTTCATATGCGAAGTATGCCAGAAAGGATTCCAAAGAGAGCAAAACCTTCAACTGCATCGAAGAGGTCATAACTTACCGTGGAAATTGAAGCAAAAGAGCACCAAAGAAGTTCGAAGAAAAGTGTACTTATGTCCTGAACCAACCTGCGTGCACCATGAACCGTCTCGTGCACTAGGAGACCTTACAGGGATCAAGAAGCACTTTAGTAGAAAACACGGTGAAAAGAAGTGGAAATGCGAGAAATGTTCTAAGAAGTATGCGGTGCAATCGGATTGGAAAGCACATTCAAAGACATGTGGCACTAGGGAGTACAGATGTGACTGTGGTACTCTTTTCTCACGGTACATTTCTCTTCATTGTTCATTCTTTTATTTTTTCCTTTTTCGACGAAATTCAAAGGTCGTTCTTTTTATTTTCATATTATCGTTTTCTGTTTCAAATTGGCACAAATTTTTGTTCAATTTGGATTTATTTATAACTAGAATTTGTGTCTGATCCAATAGTTTGTTTGATAGGGATAAAAATTATGATATATTTTGAAAAGATTCAATAATTAACGGAGATATATATATCTGGTTCTTTACCACTGTCCAATAACAATAAATAACAAGTACTCAATAAAATGTCTAACTGCATTACTATGTAATAAGTTTCAAATTAAAATTTTAATATAACTAACATACTTTCTATAGAATACATGTTTACTAAAATACACTATTATATATATATATATATATATTCCTTTTTTTGTTTTGTTATTTACTTCTTTGGCAATAATTGTTTTTGAACGTACGTATTTCATGTACACAAAACACTATTAATAATTTTCAATAATTTTAGTCTGACTTTTTTAAAAATTTATGTTATTTTTAACAAGTTGACCTATTTTGATTCATATTTGATCGATAGAATGATTAAACAGATATGGGTATTTGAAGATCATGGTTCCTAGATTGAAAATTAAGTTCAAATCTGTTTATTGACCAAGAGTAATCCATTTACAGGCCTAAGTGTCTTAAAAACTGATAACTGGTGCACTGGAATTCAAATCAACTATGTTCCGGTTAACACTTATACAGTAAAAGAGCATGCCATTTTACCAAATGAATTACATTCCTACAATTATACTTTTTAATACTATTGCGGGAATCAAAATTAAAACCATCTCGGACGTGAAAAGACATAATATGTTGGAATTTTCATATCCTTTCCCATTGACATGACAATTATTGAGTAATCATGAATTTTAAATCAAATTATTGGGTCATGATGATTTCATTGACATGTAACTCAATCAAATCAACATGAGTTTCTGTTCAGAACACTTTCGTTCAACTTTTTTGGTTTGGTGAAAAGTCGCCTAGGGTTAGAAATATTTAGGGTTTTTATGTGATTGGGAGACGAGTAATAGCAACATGTGAATTCTACAACTGACTAGACATAGTCAGTGAGCTTTCAAAAAAGTATAACACCTTTTATTTCTTTAGTTTTTTCTTATAATCTTGATTCACGAGAATAATGTAAGCAGTATACAATTTTGTTTGTTTTTGGTTGGCTGCATGTTATGTTCTGGTCCATCTTTTCATGAATATACGTTACTATTATACGCTGCACCTTGAAATCTGAGCTTAAATTCTGTACAAAGTTTAACTATTTAAATTTCATCAGATGACGTTAGAATAATGTTATTACAGTTTGCGTGGTTTATTATGTGGGGACTTCCATGAAAATGGAAAAATTCTTGGCATAGGGAATAATGCAATAAATGAAACAAGTTGATAAGTCATGAATTTAATGAAGTATGAGAAGTTACTTTCATGTTTGTTGCAAAATTCTACCTTGGCATTAAATGAATAGGCAGTTTTAAAAATATGCGGTTGTTTGAAACAGACTTGACTTTTTCCTGAAATTGTGTGAATTTTGATAGTCATAACCAACAATACAAATTTTATTGGACCATCATCATTTATCAGTAACTGTTGACAATTGCATTGAATAGGCAAAAAGGTATGATTAATTTATAGTGTCAGAGAAAAATATATCATGCACAAAAGTTTGTTTTCCACAACAACAAATATGTTTTCCTTTGTTATTTAATGTAACCAATAGTTGACTCTTGCCTCTATAGTCATAGCCATTGTCACTGCTAAACATAGAAATTTCAATTAAGCTTGTAAAATATATTATATTCATAAAGGTGAAAAATCACAAATAAAAAGTTTGTAAATCTTTAAATATTGCAGATCTTTATTTGACCATATGAAACATCAAACGTTAGAACTTTCATACAATGGCTTAAGTCGTCGGTGTTTGTTAGCGGAGTAGAATCTACTGTAATAGAAACTCAATAGTTATTATGTTAATGACCCAATCTGATTGTTTTTCAAAGAAGTCTGTCTCCCTTTTTGTTTACTAGTGTAGTAAAGTACTTATTAGTTATTACTTAGTATGATGTTGATGCATGTAGGCGAGATAGCTTCATCACACATCGAGCATTTTGCGATGCACTAGCTCAAGAAAGCGCAAGACTACCATCGAACCTTTCTGCACTAGGAACCAACTTATATGGTGGCTGCCCGAACCCAACAGGAAACTTGAACTTATCACATCAACTCAACTCACAACTTCCTTCTTTGCAGTATCAAAGCAATAATTCCGACCTCCTCCGCCTTGGTGGCAATAGACCCTCCTCTAACTTCAACCACCTCCTCCCTCCCTCCAGTCCTTCCTCTTTTCACTTTGGTTCCAACTCTCAAGAGTTCAACAACAATAACATTGGTATCAACGTTGATGGTAATCAAGACGCTACCAATAACAACTTATTTCATGGTCTCATGCAACTTCCTCATCATCAAGATCTTCAAAGCAACAGAAACAACAATAACTCGTCGTCTTCTTCTTCTGCCGCTGCAAATCTCTTCAACTTAGGATATTATTCGAACGAGATGAATAATAGTGAAAATTCAAACCTGATGAACGATAATCTACCGATGTCAACAAATTTCAACAACAATAATTCTCAAGATCATGAACTCCCTCAAATGTCAGCAACTGCACTGCTTCAGAAAGCAGCACAAATGGGGGCAACAACAAGCGGGACTGGAGGGACGAAAATGGCATCAATCTTCAAACTACCAGGCTTCAACAGTGAGGAGAATGAAAATGATATGATTCAAACGCATAATATCAACGACATTATGAATTCGTTTGCAAATGGAAATAGCACTATGTTTGGAGGCAATTCTATGGGGTTCAGTTTAAATTCAGGTAGCAATATTGATCATGGTCGAGGTAAATTTGGTGCAAATATAAGTGATGGATTAACAAGGGATTTTCTTGGAGTTGGTGGCATTATGAGAAATCTGGGAGGTGGTGGTGTTACGCAAAGAGATGTGCAACAACATCAACAGCAGCAGCTTGATTTAGAACCTCAGTTTAAATCAAGTTCCTCTGGAAGATCATTTGGAGGTGGGAGCTTGCAATGATATAATTATTTGAACGTACATATAGCTGCATTTTTCAAGTTTTCAGGTAATGTTGTTTAATTAATATTAGTATTGTAGGATTCAAATATTGTTAATTTATATGTTTGCTACATTTCTTTTTTTATTGAAATATTTATG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020705077.1	3.8e-119	protein indeterminate-domain 5, chloroplastic
Swissprot	Q8GYC1.1	5.3e-86	Protein indeterminate-domain 4, chloroplastic
trEMBL	A0A2I0X8J3	2.7e-119	Zinc finger protein MAGPIE

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G02080.1	49.28	8e-104	374	AtIDD4;IDD4	indeterminate(ID)-domain 4

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G00603	AT2G02080.1	487	192	14	36	501	54	506	49.28	8e-104	374
AfisC6G00603	AT1G14580.2	180	28	1	22	201	41	218	83.33	4e-94	342
AfisC6G00603	AT1G14580.1	180	28	1	22	201	41	218	83.33	4e-94	342

Ortholog group

Species	Genes
Allium cepa	g313920.t1
Allium fistulosum	AfisC6G00603
Allium sativum	Asa8G06234.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF12171.5	zf-C2H2_jaz	Family	65	87	23.4	4.8e-05

Gene Ontology

Accession	Ontology	Name
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005576	C	extracellular region
GO:0005783	C	endoplasmic reticulum
GO:0005634	C	nucleus
GO:0007029	P	endoplasmic reticulum organization
GO:0008270	F	zinc ion binding
GO:0008356	P	asymmetric cell division
GO:0009506	C	plasmodesma
GO:0009507	C	chloroplast
GO:0009590	P	detection of gravity
GO:0009705	C	plant-type vacuole membrane
GO:0009937	P	regulation of gibberellic acid mediated signaling pathway
GO:0009958	P	positive gravitropism
GO:0009959	P	negative gravitropism
GO:0009965	P	leaf morphogenesis
GO:0010029	P	regulation of seed germination
GO:0010031	P	circumnutation
GO:0010051	P	xylem and phloem pattern formation
GO:0010075	P	regulation of meristem growth
GO:0010150	P	leaf senescence
GO:0010168	C	ER body
GO:0010431	P	seed maturation
GO:0010601	P	positive regulation of auxin biosynthetic process
GO:0044212	F	transcription regulatory region DNA binding
GO:0016298	F	lipase activity
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0032527	P	protein exit from endoplasmic reticulum
GO:0042803	F	protein homodimerization activity
GO:0043621	F	protein self-association
GO:0045604	P	regulation of epidermal cell differentiation
GO:0046982	F	protein heterodimerization activity
GO:0048364	P	root development
GO:0048444	P	floral organ morphogenesis
GO:0048510	P	regulation of timing of transition from vegetative to reproductive phase
GO:0048573	P	photoperiodism, flowering
GO:0051302	P	regulation of cell division
GO:0052689	F	carboxylic ester hydrolase activity
GO:2000012	P	regulation of auxin polar transport
GO:2000904	P	regulation of starch metabolic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network