result

Gene information

Detail information of AfisC6G00715

Location

Gene	Chr	Start	End	Strand
AfisC6G00715	chr6	106566675	106567838	-

Sequences

CDS

Protein

Gene

>AfisC6G00715
CTCCCAATATCATTCTCACCTACCCATTCTCACATACATATAATGACATCAAGAAAGCTACAGCGCCATGGCAGCGGAGACAGCAGCGTGATCATCGACCCACAAGAGACGACCACGGAAGCAGACTCATCCAAGAATAAACTCCAATCCTCCCAGTACAAAGGGGTGGTCCCCCAACCAAACGGTCGGTGGGGCGCTCAGATATACGAGAAGCACCAACGCGTCTGGCTCGGCACCTTCAACGAGCAATCCGCCGCAGCCAAGGCCTACGATGTCGCCGCCCAGCGCTTCCGAGGCCGGGACGCCGTCACCAACTTCAAGCCCCTGTCCGACGCGGCCGAGCTCGACTTCCTCAACCTCCACTCCAAGTCCGAGATCGTCGACATGCTCCGAAAACACACCTACCTCGACGAGCTCTCACAGAACAAGCGCAACCAAATCAGAGCAAACGGAAACGACAACAACTGCGCGGTCAGCAGCACCAGCTGCGCTGCTGCCCGACGTCACCTGTTCGACAAGACGGTGACGCCGAGCGACGTGGGGAAGCTGAACAGGCTGGTGATACCAAAGCAGCATGCGGAGAAGCATTTCCCGATGGGAGGGGAGGGTGGTAATGGGCTACTGTTGAACTTCGAGGATGGGAATGGGAAGGTGTGGAGGTTTAGATACTCGTACTGGAATAGTAGTCAGAGCTACGTGTTGACGAAAGGGTGGAGCAGGTTTGTGAAGGAGAAGGGTTTGCAGGCCGGGGATGTGGTTAGTTTCGAGGAGTGTGTTGATAAGGATGATAGCGAGAAGAAGTTGTATATTGAGTGCAGGAAGAGTGTTGGAATTAGTGGGACTAGTGTTAAGGTTTTTAGATTGTTCGGTGTTGATATTACTGAAGGAGAAGGAAGTTTAGATCATCAGAGCTGGGTAAACGGTAATGGCAAGAGGACTGCCGATTGTTTTAGGGGGTTGGATTTTTTTTTTAATAAGCAATTTGTAGGTGCTTTGTAATTTTTATTATTTTTTTCTCCTTTACTCTTTGATTCGAGTGTTTTTTTTTCTTTTTTAGGTTTCTTTTGTACTAGCTGCTTTGCTTTTGTAAAAACGCATGGAGAAGCTAACTGTAATTATTGTATGACGGAACTGTTAACACGTGATCAATTTCTTTGTTATTTT

Functional annotation

Database	accession number	e-value	annotation
nr	RWR85514.1	2.0e-91	AP2/ERF and B3 domain-containing protein
Swissprot	P82280.1	1.6e-88	Protein TEMPRANILLO 2
trEMBL	A0A3S3QJR9	1.5e-91	AP2/ERF and B3 domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G68840.1	63.03	3e-93	338	AtRAV2;EDF2;RAP2.8;RAV2;TEM2	related to ABI3/VP1 2

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G00715	AT1G68840.2	284	90	7	5	279	34	311	63.03	3e-93	338
AfisC6G00715	AT1G68840.1	284	90	7	5	279	34	311	63.03	3e-93	338
AfisC6G00715	AT3G25730.1	283	97	5	6	280	29	307	61.48	9e-92	333

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00847.17	AP2	Domain	38	85	30.9	2.2e-07
PF02362.18	B3	Family	157	260	100.7	3e-29

Gene Ontology

Accession	Ontology	Name
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0009536	C	plastid
GO:0009741	P	response to brassinosteroid
GO:0009873	P	ethylene-activated signaling pathway
GO:0009910	P	negative regulation of flower development
GO:0044212	F	transcription regulatory region DNA binding
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0043565	F	sequence-specific DNA binding
GO:0048366	P	leaf development
GO:0048527	P	lateral root development
GO:0048573	P	photoperiodism, flowering

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09287	RAV; RAV-like factor	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network