result

Gene information

Detail information of AfisC6G00967

Location

Gene	Chr	Start	End	Strand
AfisC6G00967	chr6	145836910	145839620	+

Sequences

CDS

>AfisC6G00967
ATGTTGCAAGATATTATAGATCCAATACCTGAGCAACTCTCAATCGAAGGAATCGATTTCCCAGATGAAGAAGACATGAACTTTTTCACAGATGAAATCTCAAACGTCGGCAACACAGCCAATACTGCTAATACTGCTACCACAACTGCTACTACAGCAGCGAGCTGTGACAATGAAAGTCTATGTTGCTATCTAGATGATGACGCCTCCTTTGACTTTGACCCAGCAACCATCTCCACCTTACTGGACTCACCAGAAGTCAACCCTACAGCCTACCAACTACCTACTTCATCAGAATATACTGCCAACAATCAAAACCAGGATGAACTTAGTCAGATATTGCTTTCAGACACAGTCAACAATGGAAACTGGCCAGCACACAGTCCAGATTCAGTCATACCACCTGAAACAGATACAGATGCAAGGCCAGGGTGGGTTCCTTGGCAATGCTATACTCCAGAGCCAGTGGTTCCTATTTCAGAAAGGCCGCAAATTACGATGTTGCCCTCGATGATGGGGTATGTGGGACTAAATGGGCTGTCTACATGCTCTTTGATGGATACAGGTATAATTGGAAGATATCATCAAAGTATGAACGGTGGAGACGCAGCGATGGGGTATCTCAATGGGGGAAGGATGATGAGCGGGGAGGGCGAAATTGGAATGGAAAGCGGAGGAATGTATAGACCTGAAACATGCCAGAGGCTTTATAGTTCAATTGACATGCAGGTAATGGGAGACTACAAAAGTTTAGTTGAAGGATGCAACAGCAACTCAATGACACTTCCAACGACAGACATCACACCATTGGATGATTCAAATATTAAAGTAGGACGTCTTTCACCCGAAGAGAGAAAAGAGAAGATACACAGGTATCTCAAGAAGAGGACAGAGAGAAATTTTAATAAGAAGATTAAGTATGCATGCCGGAAAACACTGGCTGATAGTCGACCACGAGTAAGAGGGAGATTTGCTAGAAATGACGAGCATGGAGAAGGTACAAGCAGGCAAAGTTCAAGCAATCATGAGTATTATGATGAGGAAGAAGTGGTGGTGAAGGAAGAACATGACATAATGAATTCTTCGGATATATTTGCGCATATCAGCGGCGTTAATTCCTTCAATTATAACTATACTCTAGAGTCTTGGATCTAG

Protein

Gene

>AfisC6G00967
ATTTTCTCGCTTTTATTAACCATCACTTAAATTTTTCCCTTCGTTTATTTAAAGTAGGTGCAAGGAAGAAGAGAAATTTAGTTCATGAGAAAATGTTGCAAGATATTATAGATCCAATACCTGAGCAACTCTCAATCGTAATTTTTCTAACTCCTCAATTTGCTTTTGTTTTCTTGATTTCAATCTCCTATTGTTTAACTCAACTCTTACTGAAACGTTCATGAGGTGCATTGTTTCAATGTCAAGTATAAATTATTGTTTTTTTTTCTTTTGATTTATTCGTTTTTTCAATTAATTCACTTGTTGCTTGTTGCAAACATATTTAATAGTGGACATTATGAGCTCTTAAGAATTTCGATTTTTGATTATGCAGATTTATAAAAGTTTACTTATAATGCAGCAATTCGTTGTCTTTCTTTCGGTTATCGAGTCATTTGCTTATGTTTTTACCTTAAGTCAGGTTTCAAAATGAAATAAAATTGAACTAAACATGGTTGATTATTTTGGGAATACTCCTCCTAACCAAAGCCGTATCTTTTGCTTATCTACTTACCATCGTCTTCTTCTTCCTTTTAAGAAAAGTAAGTTTTGCATGCATGCATGCAAATATGCTTTCTCAATTTTTCCATATAATTCATGTCCTTTTTCACAACCTCAGTCAATGTATTTTCCTGAGCTTAGGAATCAAATGCCAAACACACATGGGTGCACAACATAAAATGTTAACTTTATGTGACACAAAGCCATATCTTTGACAAGATTGAAACATACGACAAAATCTATAGATTCTATAACATTTTCATTTTACTTCATTTCAAAGTACAGAAGTGTATAAATCTTCCACTTCTTTGTTGTATGATTAACAGCATCTTGTAAGTAGTTTGATGTGGGATATATTCCTTTGCTTATCAAAGGTTTCCTTGTTTCTCCTTTAACTAACACAAAATGCGTAACGTAATCAAAGATAAATCATCACTTCAAATACTTCTTAAAAAATTTACCTTGCATTGAAACAGGAAGGAATCGATTTCCCAGATGAAGAAGACATGAACTTTTTCACAGATGAAATCTCAAACGTCGGCAACACAGCCAATACTGCTAATACTGCTACCACAACTGCTACTACAGCAGCGAGCTGTGACAATGAAAGTCTATGTTGCTATCTAGATGATGACGCCTCCTTTGACTTTGACCCAGCAACCATCTCCACCTTACTGGACTCACCAGAAGTCAACCCTACAGCCTACCAACTACCTACTTCATCAGAATATACTGCCAACAATCAAAACCAGGATGAACTTAGTCAGATATTGCTTTCAGACACAGTCAACAATGGAAACTGGCCAGCACACAGTCCAGATTCAGTCATACCACCTGAAACAGATACAGATGCAAGGCCAGGGTGGGTTCCTTGGCAATGCTATACTCCAGAGCCAGTGGTTCCTATTTCAGAAAGGCCGCAAATTACGATGTTGCCCTCGATGATGGGGTATGTGGGACTAAATGGGCTGTCTACATGCTCTTTGATGGATACAGGTATAATTGGAAGATATCATCAAAGTATGAACGGTGGAGACGCAGCGATGGGGTATCTCAATGGGGGAAGGATGATGAGCGGGGAGGGCGAAATTGGAATGGAAAGCGGAGGAATGTATAGACCTGAAACATGCCAGAGGCTTTATAGTTCAATTGACATGCAGGTATGTACATAAATAAGAATTATATTTATATTGAGAGAGAAACATGAAAATTTCGCTAACCTTCATGAAAGGATAATCCATGAAGCTTCCAATCTAGCTGAAAAAGGAACACAAAATAATAGTTTTGTTAGGGGTAAAAGAAGACGAGTAATTGAGATTGTTATTTGATTTCAAAAACCTAGTGTGCTTCTCTTTAATGCATCTTGAGTGAGAATTATTTAAAATTATTTGGAGGTAATGGGAGACTACAAAAGTTTAGTTGAAGGATGCAACAGCAACTCAATGACACTTCCAACGACAGACATCACACCATTGGATGATTCAAATATTAAAGTAGGACGTCTTTCACCCGAAGAGAGAAAAGAGAAGATACACAGGTATCTCAAGAAGAGGACAGAGAGAAATTTTAATAAGAAGATTAAGGTTAGACTTGCTTTTTATGCATGTCTATTATATTATTACTTCATTATGCAGGTTATAAAGAGGTATCCTTACTAACTACATACAAAAACTATGACAGTATGCATGCCGGAAAACACTGGCTGATAGTCGACCACGAGTAAGAGGGAGATTTGCTAGAAATGACGAGCATGGAGAAGGTACAAGCAGGCAAAGTTCAAGCAATCATGAGTATTATGATGAGGAAGAAGTAAGTTATAACTTATATATTATAGTTAATGTTTCCAAGTGAGATGCATTTAACCATCATAATTTGAAATAATTTCACTACTGTGTAGGTGGTGGTGAAGGAAGAACATGACATAATGAATTCTTCGGATATATTTGCGCATATCAGCGGCGTTAATTCCTTCAATTATAACTATACTCTAGAGTCTTGGATCTAGCATTTATTTAACCCATTATCCACTAAAAAAGTAGCCAGGTTGTATAATCCATGTTCTACCCGTTTTCGCCTCTTCCTCAAAATTTTCCTTCCATTACCTAATATTATGTACAGCCATTCAACAGTAGTAGTATATTCCATTCAATAACATGAATGGCATAACTATA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020247217.1	5.0e-92	uncharacterized protein LOC109824978
Swissprot	O82117.1	5.9e-05	Protein CONSTANS-like CO3
trEMBL	A0A5P1E4D9	3.6e-92	CCT domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G04500.1	55.17	7e-44	174		CCT motif family protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G00967	AT1G04500.1	174	64	6	219	384	219	386	55.17	7e-44	174
AfisC6G00967	AT2G33350.2	229	98	6	175	384	190	409	44.98	6e-43	171
AfisC6G00967	AT2G33350.1	228	100	6	175	384	190	410	45.18	1e-42	171

Ortholog group

Species	Genes
Allium cepa	g508875.t1
Allium fistulosum	AfisC6G00967
Allium sativum
Arabidopsis thaliana	AT1G04500.1; AT2G33350.1; AT2G33350.2
Oryza sativa	LOC_Os03g04620.1; LOC_Os03g04620.2; LOC_Os03g04620.3; LOC_Os03g04620.4; LOC_Os10g32900.1; LOC_Os10g32900.2

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF06203.11	CCT	Motif	285	327	66.6	1.4e-18

Gene Ontology

Accession	Ontology	Name
-	-	-

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network