result

Gene information

Detail information of AfisC6G01138

Location

Gene	Chr	Start	End	Strand
AfisC6G01138	chr6	171712807	171715040	-

Sequences

CDS

Protein

Gene

>AfisC6G01138
AAATTTTAAAAAGGTTCTTTCGAAGATAGAATAGGAAATGGAAGCAAAAGGATCTTCTTCTTCATCATCGTTATTCAACGCAAGATGGAATCCTACTAAGGAGCAAATTGCAATTCTTGAAGCTCTTTATAGTCAGGGACTTAGAACTCCAACTTCTGAGCAAATTCAACAAATTACTGTCAAGCTTAGGGAGTTTGGTACATATATATTTCTACAACTGACAAATTTTGTTTCATTTTTTTCACTTTCTACTGAAATTTTTGAAATTTTACCCATTTAATATATACTTTTGTAGGTATGACGGAGGGAAAGAATGTGTTCTACTGGTTCCAGAATCATAAGGCAAGACAGAGGCAAAAACTAAAGCAAGATAGGCTTGCTTATTATAGTAGGCTTTTTAGTCATGGAGTAGTTCCTCAATCTCATCAGTCTAGTAATGGTAATTTTTCAATTTTGGATATTTATATTTTCATATTTATTAATTGAGTTTAGTGTATGAGGCCTATGTTAAGTTTAAACGAAAATCATATTTTAGTTTCATCTGCATGCAGAAATTTGGCCATAGGGCAATTTGAATCATGAACTTTAATTAATGTGTTTGCTGGGTAGCTTATAATTGCACCACATAATTATAATGTGTTTGTATTTTGAAGCCCGTATCAATGAATGATTAATATTTGAATTTGATTTTATTTATATTTGAAATTGCACGTTGCCTAGGACATTACTATTACTATTAATTATGGTAAAAAAAATAGCAAAATGCCTAATTACAAAATATCATGATTAAACTTTAGAAGTACATCGGGAATGTCATGACCAACTGCGAGTATAATTAATTAAATTCTCTAATTGGCATCCAGGTCCTTTTTTTCTGAATTAAGTTGTAACTAGGGTTTTTTTTTACAGAAAATGATAGGTTTTGTGAAGAAGTCTAGATAACCGCTAAATCAGTCATTGATTGTATCTGATTTTAAGGTATAAGTGTACATTTTTAATTTCCAAATAATTTTCATCCATTTTGTTTTTAGAAAGATTATCAGAAAAATTATTTGTTTTTTTTGTGGATTTTTGTTTTCCGATTAAGACAATATTTTGAGATTGATTGTTGCACATTCAAATCAATTTAAGAATTTGGATGGAACCGAAATCTGATTGTGAGGTTAGAAACTCCAATAAAAGGGTATAGTTTGTCCTGTAAATTTTGTAATCAATCATCTCGTTCAGTTTTTAAATGCAATTTTTTGTGTTTGATAGTTTTATAATTTGACATTTGAGTTCAGTATGTAGTATACATGTATTTTCCCGACTAGCTAAATTTACAAACGCTTCTTTTCTGACCAAAACTTTTCATTACTACTTCATTTTGTTTTCAAATATAAATTGTGATTAAAATAAAAAAGAGTGGTCAACATCCAGAAATGAGATTGGCTCAATAAGTTGCAGAGTGGTGGAAATATTGATTGCATCAGTGTTCCATTTTGTTGCTTTCTTGAATTTCTGTGCAAAATCTTTGTGATCTTTTGCTTGCTCCATTATATAATAAACACTTTTGATTCTCCCAATTCCTTTTTTAAATGCATAATCCTCTCTCATGTGATACCTCTCTATATGTGTATATACTATATACATGCATATCATATCTAGCTAGCTAGGTCTTATTGGTTGATTTCCAAAGTCCAATCATTTTCCACTATTTTCTGAACTCAACATTGTCTTCCCAAATCTCATTACCTTTTTGCACTTTTCTGCTGTATTATTCACACTTCTTTTTGAGTTTTGACTTATCACGCATTCAAATGTACGCAGTACATTGAATATTGATCTTATGGTATTTTCTTTTCTCAGGTATATGTGGGCCTTACTTACCAGGGACTCAGGTAGGAGGAGTTGGGCCACTAGGTTGTTATCCAAACATGTACATGGCCCAAGTACCCATGCAAATGATTCCAGTCCAACAAGAACAATTTCAAGCAATGGACTTCAACTGTGCTAAGAAAATCCAAGAAAACAGCTACAATGTAGTAAACTCAGACAACCCTTTGACTGATATTGAAACTCTACAACTCTTTCCACTGCACCCAACTGGAATTCTAGAGGCTGAGAAATCAGGAAGCTCTCTCACTTCTGCTTCTGTTGATCATTCTGATCATGAATGGATAGAAGATTGTGAAAGGGAAGAAGAGTGTGGGAATTTAGTAAACAATCCGCCTTACTTTAATTTCTTTGGTTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020243683.1	1.5e-43	WUSCHEL-related homeobox 4-like
Swissprot	A2WWU7.1	9.8e-24	OsWOX5
trEMBL	A0A6I9RA05	1.0e-38	WUSCHEL-related homeobox 5-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G59340.1	37.78	5e-29	124	WOX2	WUSCHEL related homeobox 2

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G01138	AT5G59340.1	225	88	7	5	192	8	217	37.78	5e-29	124
AfisC6G01138	AT1G46480.1	171	96	3	15	182	89	250	36.84	1e-23	106
AfisC6G01138	AT3G18010.1	67	26	0	12	78	72	138	61.19	9e-22	100

Ortholog group

Species	Genes
Allium cepa	g316627.t1; g443925.t1
Allium fistulosum	AfisC6G01138
Allium sativum
Arabidopsis thaliana
Oryza sativa	LOC_Os01g62310.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00046.26	Homeobox	Domain	15	74	61.3	5.2e-17

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0001944	P	vasculature development
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0007165	P	signal transduction
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0008284	P	positive regulation of cell proliferation
GO:0009536	C	plastid
GO:0009908	P	flower development
GO:0009942	P	longitudinal axis specification
GO:0009943	P	adaxial/abaxial axis specification
GO:0009947	P	centrolateral axis specification
GO:0010067	P	procambium histogenesis
GO:0010654	P	apical cell fate commitment
GO:0010865	P	stipule development
GO:0048825	P	cotyledon development
GO:0051301	P	cell division
GO:0080167	P	response to karrikin
GO:0090451	P	cotyledon boundary formation

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network