result

Gene information

Detail information of AfisC6G01212

Location

Gene	Chr	Start	End	Strand
AfisC6G01212	chr6	184337395	184339982	-

Sequences

CDS

Protein

Gene

>AfisC6G01212
CAGTTAGCCATTTATAAAATAAACCCAAAATCTCAAAACCCTACAAAATGAATTCCGAGCTTTGTCTCATGGAGCAACAACCTCGATCGTCTTCAGAACCAATGGATACAGATGTTAGAGATACTCCCAGCATCATCGTGGATGATGCCGGGTTTAACGATGGATCATTGACGGAGGCTGCGGCTGCGTTGGCAGCCGAAGAAGCAGCGGATAAAGTGAAGGGTCCTTGGTCTCCGGAGGAGGATTCGGTGCTTAGCAACTTGGTTGAGAAATTTGGAGCGAGAAATTGGAGTTTGATCGCGAGAGGGATTAATGGCAGGTCTGGAAAATCTTGCCGCTTGAGATGGTGTAATCAACTTGCTCCTCATGTTAAAAGAAAGCCTTTTTCAGGTACTTCTGAAATTTGCTTGAATTTTGAGTTACAGTATTTTATCGTTGATCCCAATTATACGTTTCTTTTATTTTTGAGCATCAAGGGTTTATTTTTGGTAGAAACAAGGGTAGTGAAAATTTAGATTTTGACTGGCAATAATCTAATCATGTGATGATATACAAACTTAGGAGCATTAGATATGACCTGTATCATTAACCTATATTTTGTATTCTTTTTTTCCTTTTTCTTTTCACGTTGTTATGCAAATTTCATTTTTGAAATATTAACAGAGTGAAAAAAAAAATGGATTGATTTAACCATATATTAAGAAGAATGTGTTCATGCCAAAATGTAGCAAATGGCCGACTGCTATTGAAAATCTATGATCTGCAGAAATATATTTGCTTAACTTGGAGATATATGAAGATTGATTGATGTATGGCACCTAACTTGTTAGCCATTAGCCTACTAAGCTTGCATGTTATGTTACAAAGATATGGAGCACTTGGAACTTGTTACAGCTAAACAAAACTCTAATCATTCAAATATGCTTGAGGCCTTTCAAAGTGCTAAAAATCCTTATTTTGTTTGTATTGCTACCTGACTATGATTTGAGATGTATGAAATATGGTTGATGATTGACCTGTGCTGAAAAGCTTGCATGTTATTGTCATATATTGGACCTGTGGTGAAATGATTGACTGTTTTTTGGTTTGCTAAACTGTTAAAGTAAGACTTTGAAGAAACATGTAATATTTGATAGAGAAGGATAGATGACAAGAAGTTGCGGGATAGACTGAGACATTACTATTATCAGCTTTAAGGTTCTTAAACTTCACTACCAGTCGTATTTTTTACATGCAGATTTAACGTATGCTTTTTCATTCTGCCAATAACTCATAAACTGAGTATGACCGAAAATTAAGTCCCTATTCCTCGGAATAGGTATAGCCATATGCTAAAAATTCTAAACGATGTGTTTTCTGAGTTGTGTTCCTGTTGACAGATACTTACAAGACTTAACTTCACTTTACCTTTCTAGCTCTTCTTTCTATCGTTCCAACAACAATATCTGGTGTTTAAAAAAAGGATTTGTCAGTGGTTAGAGGAAAAGATAAGAAATACATTCCTCCTTTTCTGCTGGCACTAAATCAAACTCCATTCCCACCTCCAAATCATATTTCTCAGATAACTATCTCATAAAGAGTTGATTACAAATATAAAAATTATCTGCATACTTTAACACTTGGTTTATTTACTAGCTGCATGACTGCATGATATATAAGTGTGGGCATGCTGTGCTTCGGTGACTCCATATGAAGTTAGAGACAATGTAGACTGGCAGAGATTCATTTAGTGCTTTGCATACTAAGCAGGAAAATTTTAATTATCCCTCCCATTTGCTATCTTCCTACGTTCATCTTTATAATTCCAAGTCTTATGTATATTTTGATTATTAAAAAAGGCTAATATGCACATATGCTTGAATCAGAGGAAGAGGACCAGATTATTATTGCTGCTCATGCTATCCATGGTAACAAATGGGCGGCAATTGCAAGGCTTCTAGAAGGACGAACAGACAATGCTATAAAAAATCACTGGAATTCAACTTTAAAGAAGAAGCTTTGTGAGTACGGGAAAGCTAAGCTAGCTCTTAATGCTCCAAACTCTACCAATGCAGCAAGATTAAAAGAATCCTCTTCTGAAGAAGCACAATCATTCGGTGACAGTATTTCTGATCAAAGTGATGGTAAACATATTATTCAAAATGAACCAGAAGTTAGAGATCCACCTTATCTTTCCCGGCCGGTTGCAAGAATAAGTGCTTTTCATCTGTATAATCCTCTATCTGGTCAATTAAATGGTTCATTAATGTCCAAACCAATACATGGACACTTGCTTCAGAATGCTTTCAGTGAGCATGAGGTGCCATCTAAATGTGGCCATGGTTGCTGCAATGTTAATGTTAAAAAGGAGAATTCTTCAAGCTCTATATTGGGACCTGAATTTGTTGAGTTTGTGGAGAATCCAATTATTTCTAGTCAAGAGTTGGCTACTGTAGCTGCTGAATTAAGTAATATTGCTTGGGTTAAAAGTGGTTTTCAGACTACCGGCACTAGAATATTTCAGTAGGTTAGATAAAGATTTCTATGTGAAGCAAAAACAAACAATGTAGTATACAGAAATTTTGATTAAGTTGTTGAAACGTAATGCC

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020244284.1	4.1e-95	transcription factor MYB1-like
Swissprot	Q42575.1	6.2e-64	Myb-related protein 1
trEMBL	A0A8K0NB03	4.7e-85	Transcription factor MYB1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G09230.1	44.23	3e-68	255	AtMYB1;MYB1	myb domain protein 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G01212	AT3G09230.1	312	132	5	55	327	52	360	44.23	3e-68	255
AfisC6G01212	AT3G55730.1	318	120	7	56	324	54	365	44.97	1e-67	253
AfisC6G01212	AT2G39880.1	304	138	8	38	317	30	324	43.75	1e-56	217

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	58	103	60.5	1.1e-16
PF00249.28	Myb_DNA-binding	Domain	110	154	56.5	2e-15

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000978	F	RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077	F	transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0051726	P	regulation of cell cycle
GO:0042742	P	defense response to bacterium
GO:0050832	P	defense response to fungus
GO:0005654	C	nucleoplasm
GO:0009414	P	response to water deprivation
GO:0009555	P	pollen development
GO:0009651	P	response to salt stress
GO:0009723	P	response to ethylene
GO:0009733	P	response to auxin
GO:0009738	P	abscisic acid-activated signaling pathway
GO:0009739	P	response to gibberellin
GO:0010199	P	organ boundary specification between lateral organs and the meristem
GO:0010200	P	response to chitin
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0019760	P	glucosinolate metabolic process
GO:0046686	P	response to cadmium ion
GO:0030154	P	cell differentiation
GO:0031062	P	positive regulation of histone methylation
GO:0031523	C	Myb complex
GO:0034968	P	histone lysine methylation
GO:0043525	P	positive regulation of neuron apoptotic process
GO:0045944	P	positive regulation of transcription from RNA polymerase II promoter
GO:0048527	P	lateral root development
GO:0090307	P	mitotic spindle assembly
GO:1901347	P	negative regulation of secondary cell wall biogenesis
GO:1901348	P	positive regulation of secondary cell wall biogenesis
GO:1902074	P	response to salt
GO:2000022	P	regulation of jasmonic acid mediated signaling pathway
GO:2000031	P	regulation of salicylic acid mediated signaling pathway

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09422	MYBP; transcription factor MYB, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network