result

Gene information

Detail information of AfisC6G01273

Location

Gene	Chr	Start	End	Strand
AfisC6G01273	chr6	194565638	194566591	+

Sequences

CDS

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020250655.1	1.9e-42	nuclear transcription factor Y subunit B-4-like
Swissprot	O82248.1	4.8e-38	Nuclear transcription factor Y subunit B-5
trEMBL	A0A1R3L5N9	1.4e-42	CBFD_NFYB_HMF domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G47810.1	76.92	2e-45	177	NF-YB5	nuclear factor Y, subunit B5

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Ortholog group

Species	Genes
Allium cepa	g61424.t1
Allium fistulosum	AfisC6G01273
Allium sativum
Arabidopsis thaliana	AT1G09030.1
Oryza sativa	LOC_Os01g70880.1; LOC_Os01g70890.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00808.20	CBFD_NFYB_HMF	Domain	23	87	98.1	2.3e-28

Gene Ontology

Accession	Ontology	Name
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005654	C	nucleoplasm
GO:0044212	F	transcription regulatory region DNA binding
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0016602	C	CCAAT-binding factor complex
GO:0019760	P	glucosinolate metabolic process
GO:0032403	F	protein complex binding
GO:0032993	C	protein-DNA complex
GO:0043565	F	sequence-specific DNA binding
GO:0046982	F	protein heterodimerization activity
GO:0070491	F	repressing transcription factor binding

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K08065	NFYB, HAP3; nuclear transcription Y subunit beta	EC:-	Antigen processing and presentation	ko04612

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network