result

Gene information

Detail information of AfisC6G01278

Location

Gene	Chr	Start	End	Strand
AfisC6G01278	chr6	195905255	195907028	+

Sequences

CDS

Protein

Gene

>AfisC6G01278
TCTACTTAAATTTTCATATTTTATTCTCTCCGAAAAGAAGTAGTAAAAATAGTTAAAAGAAGAAAGCATTTGTTACACCCACAGACTTTTTGCAGCCATTCATTGCTTCTTCACCACCAAACTCTCTCACTTCTTCTTATTCATAAAAATCTCTTCTTTTTCTCATCAACCCATATCAATAGTATCAAGGTTTAATCCCATGAACCACGGTTTCTATCTTTGCAAAAAGAACAGTTCTTTATATGTCTTCTAACCATCACTTATTTTTCCAGGGTGTAAAAGAGAAAGTAATGGAGTCTGTTGAACTTCCACTTGTTGCTGACGACGTGACTTTCGGCAACGTTAAGATTGAAGAGTTTTTGAATGACGACTTCTTATTTGTCGATGACAAAGATGCCGAAATGGAAGAAACTGAAAGTAATGATGAAAATTTTCAAATAATCCCTGAAAAGTTCGAATCTTGCAGAGAAAAAAACGTCTCAAACCCTCCTGTTTTGTTTGAAGACTTCCCTCCTCTTCCTCCTGTAAGCTTCAATTATTATTTATTAAAATATTCTTTATTTACTATCATAAAATTTGTCCACTTATTATTTATGAACTTATTCTTTTTCAAAAATTTCTAGGTGCAAGATATACAAGAGTTAGAATGGGTTTCAAGCTTCATCCACCAAAACTCATCCATGTCAGAGTTTCTAGAAGACGAAACCCAAAACTTCAAACCCGAAAAGCAAAAAGCCGACCCGAAGCCCGAAACCCAACAACCAACCCAGCCACTTACAGTTGTCCCAAACCCAGCAAAAGCAAAGCGCAGTAAACTGACCAAAATTGTAAAAAAGTCCTGGTCAACATCAACTTCATCTTCATCATCCTTAACCTCATCATCCACGTCCTCAAGTTCATCCTACTCATCACAGCTTCTAGTTTTAAGCAAACTATTCAACAGGTTTCCGACCCCTATGCAAAATATGAAGAAAAAGAGGGGCAGAAAGCCAAAAAGTTTGTACCAGCATCAACCATCTGGAAGATTATCAGGCCTTAACGAAAGAAGGTGCACCCACTGTGGGTCAACAAAAACTCCACAGTGGCGGGCCGGGCCCAGCGGCGCGAAAACATTATGTAATGCTTGCGGTGTTAGGTACAAATCGGGCCGGTTATTGCCCGAGTACCGCCCGGCCTGTAGCCCGAGCTTTAGCAGCAGAATTCACTCAAACAGTCATCGAAAAGTGCTCGAAATGCGGAGGAAGAAGATAGAAATGGACGGAGGTGAACTTGGCTTTTGTTAATTAAGTATGCTTCAGTTTGGTTTTAATGTATATGTTTTTAAGTTTGATTAGGGCTAGAAAGTAGTTGTAAAACTTATTTGCAGGGTAGGGGTAGACAGGAGAGACTGATCAGAAATTAAAATTTGAAATTTACGGAGAGGGTTTAGTTAGTATGGTTTTATTTTCCATGTCTAATTAATTTAAATTAGTAGTTGTTAGTTCAGAGTTGGAGCTAGAAATTTTGAACTATGATGATATATTGTAAGTATTGCATTGCCATATCTTCTGTTTGAATTTCAAATCAAAATAGGAGCCACACATATCTCTTTGACCCATATTCCTTGAGTATATACAACAATTTGTTTATATTTGCTTAACTTTATGTGGAGTAGTGGATTGAATTGGTGACATGGTATCATTGGTTGTCTATGCATTGGAGACTTTGGTTTGTGCTCTTGCTTTTTTGTGTTCTTCTTTTCATTGTTTTGTTATGCAGACAGATGTGCTTATCC

Functional annotation

Database	accession number	e-value	annotation
nr	BAJ90033.1	1.1e-33	predicted protein
Swissprot	O65515.1	6.2e-29	GATA transcription factor 7
trEMBL	F2D4L2	8.1e-34	Predicted protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G66320.1	45.78	9e-37	150	GATA5	GATA transcription factor 5

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G01278	AT5G66320.2	249	97	9	87	312	93	326	45.78	9e-37	150
AfisC6G01278	AT5G66320.1	249	97	9	87	312	93	326	45.78	9e-37	150
AfisC6G01278	AT4G36240.1	275	117	9	36	303	4	232	38.18	5e-36	148

Ortholog group

Species	Genes
Allium cepa	g440419.t1
Allium fistulosum	AfisC6G01278
Allium sativum	Asa8G05143.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00320.24	GATA	Domain	237	271	61.8	3.1e-17

Gene Ontology

Accession	Ontology	Name
GO:0000977	F	RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085	F	RNA polymerase II transcription factor binding
GO:0001228	F	transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682	F	chromatin binding
GO:0016020	C	membrane
GO:0004366	F	glycerol-3-phosphate O-acyltransferase activity
GO:0005783	C	endoplasmic reticulum
GO:0005634	C	nucleus
GO:0005667	C	transcription factor complex
GO:0006357	P	regulation of transcription from RNA polymerase II promoter
GO:0007623	P	circadian rhythm
GO:0008270	F	zinc ion binding
GO:0008654	P	phospholipid biosynthetic process
GO:0009416	P	response to light stimulus
GO:0009845	P	seed germination
GO:0016287	F	glycerone-phosphate O-acyltransferase activity
GO:0030154	P	cell differentiation

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network