result

Gene information

Detail information of AfisC6G01312

Location

Gene	Chr	Start	End	Strand
AfisC6G01312	chr6	202608844	202612942	-

Sequences

CDS

>AfisC6G01312
ATGAATGGGGATCAGATGAACCAACACAATTCTCCTACTAATCAAAATTGGCAATATGAGAACATTCTGCCCAATTCATCAGTTCCTAATTATCAGACAATGGATATTTCTTCAAGCAACTTGCATGTTCCTCCAAGACTTGACATGGGGTTGTTTTTGCCCACAAATATCGGAAGTCTTCCTCCTGCTTTATCTGATTTTCCAATTGATTCTTCCTTCATTGAGCGTGCTGCGAAGTTTTCAAACTTCAATGCTGGTAATTTTAGTACATTATTAGGCAATCCTTCTGGATTTTTAAAGAGTGATACAGTTAGAGAGAGTTCTATGAATGTTGATGGCACGAGGTGCGAAAGTGCAGTGAATATGCAAACAAAGAGTGGAAATGGAGTTGAAGAGCCTCAAGATGTAAATAATTTATCTGTAGATTCAAGCTCAAGAGCGATCAATGTTAAGAAAAGGAAGTCCAATAGTCAGGATATGGAACTTGACCATATACAAGGAAGCCAACAACATTCTTCTGAAGTAAGAAAAGAGAATTCTGAATCTAAGAACATAGAGTGCAGCAGTTCAACTCCGACTAGTGGTAAAAAGTCATCTGGAAAGAAAACAGAAGTTAACACAGAAGAACCTAAGCAAGACTATATTCATGTTAGAGCACGAAGAGGCCAGGCAACAAATAGCCACAGTCTTGCTGAGAGAGTTAGGAGGGAAAGGATTAGTGAAAGAATGAAATATTTGCAAGACCTCGTGCCGGGTTGTAGCAAAGTTACAGGAAAAGCAGTCATGCTAGATGAGATCATTAACTATGTACAATCTCTACAAAGGCAAGTTGAGTTTCTATCTATGAAGCTCTCTACCGTGAATCCGGGCATTGATGGAAACATAGAAAGGCTCTTATCTAAAGATATTCTTCAACCTCAAGTTGGATCTTCTTCATTGGGCTTTTTGCCTGATATAATGCATCATCCACAGTTTATGCAGTCTCAACATGGTATGCTGCAAAATGAGATTCCAGGCATGGTAAATCATTCAGAATCTATTAGAAGGGCAGTGAATTCTCAGTTTCCAGCTTTGAATCTTCTAAAGGGTCCCTCTCCTCAGGTATTTTTGTTTTTCTTCATAAGGTTTAACTGTCATTTTTCTAGCACTGCGTTTTCTTTTTTCCTTTTTCCTCCTCCTCCTCTTTCTTCTCTTTTTGTGTGTAAAATGCATGCTTGA

Protein

Gene

>AfisC6G01312
GTCAAACAATTAAAAAGATTATTTTTTTTATTACCAAGAGAAGTTATTCATGGCGGTGCTAATCATTTAATGTCTTCCTGTGTATAAATTCTACACTTAATATCCCTCTATAATTTCTATAGCTCAGATTGGATAGAGTTGATATTTTTTTAGCGTGTTCCCTGAAAAATTGCTCCATTGATCAAAATAGCAATTTAGCAAAGACTCATAACTCGGTATCTTTCATCTCACTCCTCACTGTTTATTTTTAGCAAAAATTGAAGAAAGATTTGATCTTTAATTGCCTCTATCATCTAATCATCTTTTCGCTTCAACTTTATCTGTACTTGAAGATACTTTTTCTGCTATTATCCTAATTTTAGCTTTGATTAATATGAAACATTGGTTCTTTGTAGCGATTTATTAGTATGAATTGGGTTAGTGACTTTTGAAGATTCCTCTTAGATTTGTTTGGTTTGGTCAATTAAATCAGTTGGAGCAGTTGATTCTTTTTGAATTGGTTCATATTTGTCAGGAATCTCATGACTTAAGATGAAGTATATAACTAGTGCTATACGTTGAGTTATTACATTTGGGTTGGAATAAAAAGATATATCTACAAAATGAATGGGGATCAGATGAACCAACACAATTCTCCTACTAATCAAAATTGGCAATATGAGAACATTCTGCCCAATTCATCAGTTCCTAATTATCAGACAATGGATATTTCTTCAAGCAACTTGCATGTTCCTCCAAGACTTGACATGGGGTTGTTTTTGCCCACAAATATCGGAAGTCTTCCTCCTGCTTTATCTGATTTTCCAATTGATTCTTCCTTCATTGAGCGTGCTGCGAAGTTTTCAAACTTCAATGCTGGTAATTTTAGTACATTATTAGGCAATCCTTCTGGATTTTTAAAGAGTGATACAGTTAGAGAGAGTTCTATGAATGTTGATGGCACGAGGTGCGAAAGTGCAGTGAATATGCAAACAAAGAGTGGAAATGGAGTTGAAGAGCCTCAAGATGTAAATAATTTATCTGTAGATTCAAGCTCAAGAGCGATCAATGTTAAGAAAAGGAAGTCCAATAGTCAGGTAAATGGTTACACGACTGTCTTACTTGCAAAGTTCACTTATGTTAGAGTGTGATTTTGCAACTTCTGTTGTTAGTGAAAATCTTGATTTTCTAGTAGACTTTGGCTTTTGGTTTAGAGTTCTTAAATCCATATCTTGCAACATAAGAATTGACATGAAGTATAACTGTTGTTATGTGATCGCAATATATAACCTGAGTAAAATCATTATTAGGGTGCGTTTGCGCAAGGCCACATCTATGCATAATGCAACCCTCATCATATTTCAAACATACATAAATACCATTATGGGTTATTATTTTCAAACAAAAAACAGCTTTCCATTTCTAAAATTATCAAATATCTTGATTTCATAGGATATGGAACTTGACCATATACAAGGAAGCCAACAACATTCTTCTGAAGTAAGAAAAGAGAATTCTGAATCTAAGAACATAGAGTGCAGCAGTTCAACTCCGACTAGTGGTAAAAAGTCATCTGGAAAGAAAACAGAAGTTAACACAGAAGAACCTAAGCAAGACTATATTCATGTTAGAGCACGAAGAGGCCAGGCAACAAATAGCCACAGTCTTGCTGAGAGAGTAAATATCTAATTTTAAGGATTAAAATTTTATATTTTGGTATTACACTTTGTTGTAAATATGTTTGTGTGTTGCAGGTTAGGAGGGAAAGGATTAGTGAAAGAATGAAATATTTGCAAGACCTCGTGCCGGGTTGTAGCAAAGTATGTTGATATCTTTTCAAGTTTATTGGCGATGTTAAACTATATGTATACATGCTAAGCTACACCATCAACGTATCATTTTTATTCGAATTAAATATGAGGAATATGGTTGTTCAAGAATGTTGCCATGTAATCTTGAGTCCTTGATTTGTGTTTTACTTTTTATAAAAAAAAGAAAAAAAAAGGGGGGAAAATCAAGTTTTGCTTTGGGGTAATAACATGAGCTGCTTGGTACTGATATGATAATGCTAGCTTTTTGAACTCCTAAATATGCTAAAATGCATCAATTAATTTAGGCCCCTTGACCCTTGATTTGGAGGTCCAGATATATACATAAACTACATTTCTTATCCCTTGTTAAACTACAATTCATCATCTAGTTTTTTGGCAAATCAAACTAGACCGAGTAAAATAGCTTTAGTTAATCAACAGAATAGAAGCAGACATTGCAAATTATTCTCACCACAATCAGAAATGAAAGCTCGGAAGAGCCTCTTAGCTACAGTTTCTTAACCAAGTTGCAATGCTATATTTAACACTAGCTGCATATGATATTTAAAAATCATTTACAAATGGTAGTAGATTTTCCGTAGAAAAAAGATGGAGGGAAAATCTCTAGACCAATACATAACCATAAAAGAGTATTAAAGCAATTCAAACAAGAAAACATAGTAGTTTAAAATTTACATTCAAACTGAGGTAAAATCAATCATTTATGTATGGCAGGTTACAGGAAAAGCAGTCATGCTAGATGAGATCATTAACTATGTACAATCTCTACAAAGGCAAGTTGAGGTACGTTAATGCATGTGCAATTTGTTTTCCAGTCTTGGAGTTTCAAACTTATATGTAAGATAATTAATATTATCCATCTTTACAGTTTCTATCTATGAAGCTCTCTACCGTGAATCCGGGCATTGATGGAAACATAGAAAGGCTCTTATCTAAAGATGTAAGTACAGTTGATCACTTTGCGAAATTTCTTTTTCAACTTGATGAGTTTGCAAATTATATACCTAAATATAGCATCCCATGATATTGCTCAAATAAACTACGGATTCTGTGTCAGAAATCCCCTTAGTTTTCCGTTATTTGATATCATTTTTGTTAATGACAGATTCTTCAACCTCAAGTTGGATCTTCTTCATTGGGCTTTTTGCCTGATATAATGCATCATCCACAGTTTATGCAGTCTCAACATGGTATGCTGCAAAATGAGATTCCAGGCATGGTAAATCATTCAGAATCTATTAGAAGGGCAGTGAATTCTCAGTTTCCAGCTTTGAATCTTCTAAAGGGTCCCTCTCCTCAGGTATTTTTGTTTTTCTTCATAAGGTTTAACTGTCATTTTTCTAGCACTGCGTTTTCTTTTTTCCTTTTTCCTCCTCCTCCTCTTTCTTCTCTTTTTGTGTGTAAAATGCATGCTTGAAAGACACTAATTCCAACTATGTAATATGTATGCCATGTTAAATTCAAGCATTATAACTTGTTTGTAATAGTTACTAGACTTCTGTTGGATATTCCCCTGCTGTTTGCATCGATTCTTATTAGTATTGTGCATGAGTAGTCAAGCCACCTTCTATTATAGTATGCTTCTCTATTTTAAGATCCTGATATATTATTCCACACACCTCTCTTTCTCCCCTTTATTATTTTGAAACTTGGTTCTTTTACTGACGACACCAAAGAACAATTGTGTTTTTCGCCTTGTTATATGTACATACATCTGTCTGTGTGTTTATAGACATATTTTGACATATTATTTGTTCAACCACCAGCTACCAAATCCATGGGATACCGAGCTACAGAACATGCTTCAGATGAATTTTAATGCGAACAATCAAGAATTTGATGGCAAAGCTCATAACACATTTCAACAATAATATATGAAACCTTACTACTGAGTTTCTTGAACTTGTTAAGATACTTTCATCTCGCCCCTGGATCAACTACATGGAAACTGCGAAGAGATAAAATTTGTATGCATATACTGTGATCAACAGGCCTTCTTTTGCCATATCAGACTCCCCTTTACTATTTATTTCTGTTAATCAAGATATATCAGAAAGTTCATTAATGAAATGATGCTTGGCGTTGTATTAGTTATTTTTATAGTGGAAGATATTGTTCTTTCATTCGTCTCCGTTTTATCATATCAACAAATAAATTGAGTTCTCTTTTGTATCTGAAACTTCATTTGTATATTAACATGAGCTTTTGAATGATGTTACAATTTCAATTGGAATGCTGGATTTACACTGTTGTTTGGTTAAAAATTTCTTTGGCCAGGAAGAAACCTT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020267398.1	1.9e-94	transcription factor bHLH49-like isoform X1
Swissprot	Q9CAA9.1	1.6e-45	bHLH transcription factor bHLH049
trEMBL	A0A1R3L5Y7	1.7e-92	BHLH domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G68920.3	48.13	3e-66	249		basic helix-loop-helix (bHLH) DNA-binding superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G01312	AT1G68920.3	347	137	12	43	359	103	436	48.13	3e-66	249
AfisC6G01312	AT1G68920.2	348	137	13	43	359	103	437	47.99	5e-65	245
AfisC6G01312	AT1G68920.1	348	137	13	43	359	103	437	47.99	5e-65	245

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00010.23	HLH	Domain	226	274	28.4	1e-06

Gene Ontology

Accession	Ontology	Name
GO:0001046	F	core promoter sequence-specific DNA binding
GO:0001228	F	transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0006366	P	transcription from RNA polymerase II promoter
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0046983	F	protein dimerization activity
GO:0009637	P	response to blue light
GO:0009739	P	response to gibberellin
GO:0009911	P	positive regulation of flower development
GO:0040008	P	regulation of growth
GO:0048446	P	petal morphogenesis
GO:0080147	P	root hair cell development
GO:1902448	P	positive regulation of shade avoidance
GO:2000488	P	positive regulation of brassinosteroid biosynthetic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network