result

Gene information

Detail information of AfisC6G01364

Location

Gene	Chr	Start	End	Strand
AfisC6G01364	chr6	214741613	214745881	+

Sequences

CDS

>AfisC6G01364
ATGTCGAATCAAAGAGCAATGGATGCCTACCAGAAATTAGAAAAAGTTGGTGAAGGAACTTATGGGAAAGTCTACAAAGCAATTGACAAAAGTTCTGGAAAAATTGTTGCCCTCAAGAAACAAAAGCTTCCTGAAGACGATGAAGGAGTTCCACCCACTACCCTTAGAGAAGTTTCCATTCTCCGAATGCTCTCTATAGATCCACATGTAGTCAGACTGTTGGATTTGAAGCAAGGAAAAAACAAAGAGGGAAAATCAATTCTCTATCTTGTATTTGAGTATATGGACACTGATGTGAAGAAATACATCAAAAGTTTCCGAGCAAATCACACTCTAATTCCACCCAAGAATATCAAGATTTTGATGTTCCAGCTATGCAAGGGAATGTCCTTCTGCCATGGCCATGGTGTTTTACACAGAGATTTAAAGCCACACAATCTTTTAATGGATTGCAAAACAATGAAGCTGAAAATAGCTGATCTTGGACTCAGCAGAGCATACACTGTTCCTTTGAAGAAATACACTCATGAGATTCTCACATTATGGTACCGAGCACCAGAAGTGCTTCTTGGCGCTACTCACTACTCTACTCCAGTTGACATGTGGTCAGTAGGCTGTATATTTGCTGAACTAGTTACAACACAGCCACTGTTTGCTGGAGACTCTGAATTGCAACAACTCCTCCATATTTTCAGGCTATTGGGAACACCGAATGAACTAGTATGGCCTGGAGTAAGCAAATTACCGAATTGGCACGAGTATCCACAATGGAATGCAAAGCCATTATCAACTGCTGTTCCAAATTTAGATGCTGTGGGACTGGATTTGCTTTCTGACCATGCTTTGATCTCTCGTGCTCGTTCCATCAATCCTCACTGGCAAGTGGTCATTTCAAGACCCATCGGTAAGAGGAGGATGAGATATAACACTTTAGCTAAATCATCCCATGTCCAAGGTCAGGGTCGTGAAGATGAATCGGCAAGAGTATCAAGAAGACTAATAAGTTGCTTGTTGAAGGTTGTCTCATCAGGTCCAAAATGGGATGGCTCACCTTCTCCTAGTGACAGAAAAGGAGGAGAAATGTGCAGAAGATGA

Protein

Gene

>AfisC6G01364
AAATTAAAGCCCATCCACCGCTCCATGAAAATTCGAATTTCAAATTCAAAACTAGCCGTTAGTGCATTCCCTAATGTTCTAACGCCTATTCGTTATTTATAAAAATCAGTCAAATGTTTCTCTTTTATAAATTCCTTATCGTATATCTTTAAAGAAGACCAACAAAATAACAAAACAATCAACGCCGACAAGTAAATTCGATATAGATGTCGAATCAAAGAGCAATGGATGCCTACCAGAAATTAGAAAAAGTTGGTGAAGGAACTTATGGGAAAGTCTACAAAGCAATTGACAAAAGTTCTGGAAAAATTGTTGCCCTCAAGAAACAAAAGCTTCCTGAAGACGATGAAGGAGTTCCACCCACTACCCTTAGAGAAGTTTCCATTCTCCGAATGCTCTCTATAGATCCACATGTAGTCAGGTAATTTATCCTCTCCCCTAAAGATTTTGGTTTATTTTAATTTGTGTGATCAGGGGAACATGATCTCTGTTTGACGGGTTGTCAAGTAAATTTTGTAAATCCAATAGAAAATTTAGGGTTGTTTTCGGCAAGTTGAAATCTTTTTACCGATCGGCGTTGATAACAAAAAGACTTGTTTCTTTAAATATAAAAAGAATAGTTTTGTGTATTTTGCGGGCTACATGTTTGCTAGAATGCCTGATGCCGCAAAAATTTTTGCTGAATGCGTTTCTATTGAAAATTTCATTCCCGATTTAAATGCAGACTGTTGGATTTGAAGCAAGGAAAAAACAAAGAGGGAAAATCAATTCTCTATCTTGTATTTGAGTATATGGACACTGATGTGAAGAAATACATCAAAAGTTTCCGAGCAAATCACACTCTAATTCCACCCAAGAATATCAAGGTTATTTTTATTTTAGAACTGTGGTTTTGTTATTTTTGTTATGTTGTTTTGAAGAATAATAATTAACCTATGTTTTATATGCAGATTTTGATGTTCCAGCTATGCAAGGGAATGTCCTTCTGCCATGGCCATGGTGTTTTACACAGGTAAGTCACTGAAAAGATATTTATTGCAATTAAAGTGCTAAATCAGTCAATCTAAATGTTTTATTAATTTTGCACAGAGATTTAAAGCCACACAATCTTTTAATGGATTGCAAAACAATGAAGCTGAAAATAGCTGATCTTGGACTCAGCAGAGCATACACTGTTCCTTTGAAGAAATACACTCATGAGGTACGTAGTTCTCCTGTTTAACTGTAAATGATTAAAGAATTTCACATCGACTGAGTATGATCAATTTTGCTTTAGATTCTCACATTATGGTACCGAGCACCAGAAGTGCTTCTTGGCGCTACTCACTACTCTACTCCAGTTGACATGTGGTCAGTAGGCTGTATATTTGGTATGTCACATTTCTATATCTTGTTCACGTATGTATTGATGGTATTTTTATCGAAGCATTATTTAATTTGTTTTATTATTTATGTTTTAGCTGAACTAGTTACAACACAGCCACTGTTTGCTGGAGACTCTGAATTGCAACAACTCCTCCATATTTTCAGGTATATGATAATAAAAAAAAATTGGTCCAACTCACTTCACTTATCAATGCAAATTTATGTGCATATAACTATATATTTGCTGTATGATCATATGATATAGACCATTGGGAACACCAAATTTATTGCATATATAGTTACTATATATTTGCTGTATGATCATGATATGGGCTATTGGGAACACCAAATTTGTGTGCATATGACTATATATTTGTTGTATAATCATGATATAGGCTATTGGGAACACCGAATGAACTAGTATGGCCTGGAGTAAGCAAATTACCGAATTGGCACGAGTATCCACAATGGAATGCAAAGCCATTATCAACTGCTGTTCCAAATTTAGATGCTGTGGGACTGGATTTGCTTTCTGTAAGTCTAAATATAGTATTTTTCTTTCATAAGTATTCACAGGTTCTAAAATTTTGATTCTGTTAAATGCAGAAATTGTTGCAATTTGAGCCTGCAAAAAGAATTTCTGCAAAAAAAGCAATGGAGCATCCCTATTTTGACGGCTTGGACAAAGCAAACTTATAACTCAAGCTTCTGATCGTTATCCAATGTTGCTTCACTCGAGCATATTACAGTGTGTGCAACTAACGAGCATAGTAATTATCATGCTCTATGTTTCTATATAATTTGAAGTTTGTATGTTTTTTATGGATAATCTCGTTAGCGTCTTTTAAATTTGGATTATTGATGGCATGGTGACAGCTGATTAATGTAGCAAAAATTGAATTTTTGAATGTAATGAATTACTATTATATCTGAATAGTGATTACAATTCTCAAGTTTTGTTTATCTTCCTTGTATAAATATGAAGAACAATCATCCAATGTCATTTGATTATGAATAAGTTGTTCAAATCGTTCAGAGTTGGCGAAGTTGGAGAGGCTCGGTTTGTCTAAGTCGGGTTTATTGGTTGGAGTAGCTAGTGCTTGCATTAGCCCCCTATAAATATATTGACTCGTCATATGGGCTATTAAAGCTCTTGTTCCTTGTAGCTATCTCTCTTCAATCTTCACTTTCACGATCAAACTCAACATTACGTGAAAACCATACAAACAATCTTTGTGAAAGTCAATTCCAAACTTAATCAAACTTCGATTTTAACGTAAGGTAATGATTTGAGGGGGTTTCAATCTACAACTGAACTAGGGTTTCAAAAATCGTAACTTGTTTCGATCATCTTGTTTTTTGAGACAATTTGACTTTGGGCTGGCTGATACAGCTACATACTCTAAATTGAGGTACGAATTTATTTAAATTTTGGGTTTGAGGCGTTTGATGTTTTATGGTTGCGCCTGTGAATGTAATCGATGATAAAATTTTCATTTTTTTCCACTATCATCTGGTATTAGTTTTTTTTCATCGTATCAGGTCATATGTATGTCAATGGTGTTATCATGCTGCACCCTGTTGTGGAATATGAGAACAACTACGTGGCTATGACGGGTTCTAGTTGTTTCTCGGGTCCGACTGAATTGTCGCTTACCAACACACCTTACACATTTCATTGAAGCTTCTCACACATTATATGGGTTTTACACAAACATTGAGAATTATCTTCGGGTGGCTCCTTTTCAACTTTATCCAAGTGCGTATGCCATCCTTGTTGATCTACACATACTTTCAAGAGGGTATTTAGTAAAGAACCAATTCCTACATAAATGAAATTCATGTACAAAATAAAAAACTTCTAGAAGCAACCAATCTATTTCTACTTGGAAGTGTGCATAAATTTCAAGATAGAGGACGTGGAGTCTAAGCATAAGAACTTCAAGAAGAAATACTTCTTTCTTCGCCGTGAGTCCTATTTTTTCACCGTTTCCATTCAGGTTGTAAGCATTTTTCCCAGTTACCTTTGAATTTCTATTTGTCCTAAGTTATATATAATGCTTGGTGATTCTTTACAGGTAATCGTTCTCAGAGTACTGATCGCTTGACTAATATGCTCCAAAGACTTCTCAACGTCCTTGTCGAGGATATACCATGTTGAAGATTGATTGACCTTCACAGGACCATGCTTTGATCTCTCGTGCTCGTTCCATCAATCCTCACTGGCAAGTGGTCATTTCAAGACCCATCGGTAAGAGGAGGATGAGATATAACACTTTAGCTAAATCATCCCATGTCCAAGGTCAGGGTCGTGAAGATGAATCGGCAAGAGGTGATACGAGAAGTGTATCGAACGAACACAACCCAATGTGACTCATCGATCCTCGTCGATTGGTATAATACCTCTCAATGCTATCATCAAAGGAGAATCTGACAGTGAAGGTGACTCATCGCACGACAAATCTAAAGGAAGTCTCACGTTGGCATGGGTGGTGAAACTGGAGATGAATTTTTTATGCAAGGGGAGGTGGCTATAACTTTCATTTCGAAGATCCTTTTAACTCCTATTTTTCTTATACATATCTCAATATAACTGCGAATCCCCAAGCGGGGGTAAATTAGATAGACATGAACCCATATCTTCGGGTATTCTCCAATGGCTCATGTTTCGCATTTAATGTGTACGTACAAATGCATATTATCACCTCCATGCATGCATGCAGTCTGATTTATGCTATGAGATTACTGTCTTTAGCTCTTAATAATTTTATTTTGCTTGTTCATGCAACTGCAGTATCAAGAAGACTAATAAGTTGCTTGTTGAAGGTTGTCTCATCAGGTCCAAAATGGGATGGCTCACCTTCTCCTAGTGACAGAAAAGGAGGAGAAATGTGCAGAAGATGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020268129.1	2.0e-138	cyclin-dependent kinase B2-1-like
Swissprot	Q38775.1	1.5e-127	Cell division control protein 2 homolog D
trEMBL	A0A5P1EU72	1.4e-138	Protein kinase domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G76540.1	75.44	4e-130	461	CDKB2;1	cyclin-dependent kinase B2;1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G01364	AT1G76540.1	285	70	0	6	290	10	294	75.44	4e-130	461
AfisC6G01364	AT1G20930.1	273	58	0	6	278	12	284	78.75	5e-129	457
AfisC6G01364	AT3G54180.1	279	91	2	7	278	1	279	64.87	1e-100	363

Ortholog group

Species	Genes
Allium cepa	g315124.t1
Allium fistulosum	AfisC6G01364
Allium sativum	Asa8G05070.1
Arabidopsis thaliana	AT1G20930.1; AT1G76540.1
Oryza sativa	LOC_Os08g40170.1; LOC_Os08g40170.2

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	10	248	205.2	1.1e-60

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0000082	P	G1/S transition of mitotic cell cycle
GO:0005515	F	protein binding
GO:0000226	P	microtubule cytoskeleton organization
GO:0005829	C	cytosol
GO:0004693	F	cyclin-dependent protein serine/threonine kinase activity
GO:0005524	F	ATP binding
GO:0005634	C	nucleus
GO:0006281	P	DNA repair
GO:0007067	P	mitotic nuclear division
GO:0007346	P	regulation of mitotic cell cycle
GO:0008284	P	positive regulation of cell proliferation
GO:0008353	F	RNA polymerase II carboxy-terminal domain kinase activity
GO:0008356	P	asymmetric cell division
GO:0009409	P	response to cold
GO:0009524	C	phragmoplast
GO:0009555	P	pollen development
GO:0009574	C	preprophase band
GO:0009793	P	embryo development ending in seed dormancy
GO:0010005	C	cortical microtubule, transverse to long axis
GO:0010235	P	guard mother cell cytokinesis
GO:0010444	P	guard mother cell differentiation
GO:0010468	P	regulation of gene expression
GO:0016572	P	histone phosphorylation
GO:0030448	P	hyphal growth
GO:0040020	P	regulation of meiotic nuclear division
GO:0042023	P	DNA endoreduplication
GO:0045023	P	G0 to G1 transition
GO:0072686	C	mitotic spindle
GO:0098725	P	symmetric cell division
GO:1902806	P	regulation of cell cycle G1/S phase transition

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K07760	CDK; cyclin-dependent kinase	EC:2.7.11.22	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network