result

Gene information

Detail information of AfisC6G01408

Location

Gene	Chr	Start	End	Strand
AfisC6G01408	chr6	226434043	226440500	+

Sequences

CDS

>AfisC6G01408
ATGGGAGCCGCACCCGACATGAGTGGGGCCCAATTGATCCCGCTAGAGGAAATCGAGGTTGATAATTCGATCAGCGATTGCAGAAACTGGCCACCTGGCTTCCGATTTCATCCGACCGACGAGGAACTCGTTCTGTATTATCTCAAACGTAAGATCTGTCATCAGAAGATCAAGCTGAACATGATCGGCGATGTTGATGTTTATAAGTGGCACCCTGATGAATTACCAGGAAAATCGTTGTTGAGAAGCGGTGATAAACAATGGTTCTTCTTCAGCCCTAGAGACAGGAAGTATCCAAACAGTTCAAGGTCTAATCGTGCTACAGCGAATGGATACTGGAAGGCTACAGGCAAAGACCGTACCATCTCTCAAAACTCCAAACCTGTTGGTAACAAGAAAACTCTTGTCTACTACCATGGGCGGGCACCAAAAGGACAGCGCACTGATTGGGTGATGTATGAGTATTCATTAGCTGAGCAAGTGCTTATTAATCTAAAAAACGTGCAGGATTATTTTGTTCTATATAAGCTTTTTAGGAAGAGTGGACCTGGTCCTAAAAATGGAGAGCAATATGGTGCACCATTTAGAGAAGAAGAGTGGGATGAAGATGTTGTAGATGACAATCACATGAATCAAACTAACAGCAACTTCCAAATGATTGAAAATCCGCCTAACAATTCAGTTGACAATGAATTACCAAACGGGGATATGAACGCAAACCAAAATCATGATTTGGATAGAATGTTGTCACAAGTAGCAACTGAGCTCGATGTCGTTCCACTAAATTCCGAGTTGCATTCTGTGAATAATGGTTCTGGAAACCAGGTTGATAATAATGCAACAAACGAGAGAGCATTGAATCTAGAGCAGAACTCACTTCCAAGTTATGATTTAGAGGATATTTTGCTGCAGCTGTCAAATGAGCAAGATGTGATGCATCAACTTCCCGATTCTACTTCCAATGCTCCAAATATGTTACAGGGCAATGGTGCAAGAGATGATGATCTTGATATAAACAATTTTATGACCCTATCGCATTACATCAATGAAGTCCCTGTCCAACAAACTAACGCTGAAGAAGAGTATCTTGAAATTGAAGATTTAATAAATTCAGATTGTCAAGCTCAGAATCCAGAAAATATGAACTACAACAGTGAGCTCAATCATATTGGTGATCAGTTTGTTTTTCCTGATGAATATTTTGATACACAGATGTTTTTAGAGGATGCTATGGGACCTAATTCGGGAATGAATCAACATAATACATACTGGAATGATTTTCTAAACAATGAGCAACAGATGCCAGCTTCTAACATCACTACAGATTTTTCGGGGCTTGAGCAACATTTTAGCTCCTCGACTACATCTGTAGAGCTATGCACAAATGTTACTGCATCATCTTCAGGTGTAATGGGTGCTAATAACAATAATACAACAGAGTCATGGTTTGATTCAAATCTTTCAGCATTCTTAGGTTCTATCCCTAGTAGCCCAGCATTTGCATCTGAAAATACACTACTTACCAAAGCACTCAATCGAGTTTCTAGCTTTAGAGGAGGTCGTAATAAAGAAATGAGAGATACGTATGCTGCAGTTAATAATAACAATGGTATTATTGTGCGTAGAAGGCGGCAAAATGGTGGATTTCTATTTACCTCTTTTCTTGTAGGCCTGGGAGCAGTAGTTTGGTTTTTAAGTATTGGCATCACTGTACAGATCTTCAAGGGATTCTGGAATAGATACTTCTCTTAA

Protein

Gene

>AfisC6G01408
TGACTCAAACCCGCGGAAACAATCAATAAGTTGCAAAAACAATAACCCCTTCTCCAAGTCTCCTCTTTTCATATCCCTTATCGGATCTCAAAAATGGGAGCCGCACCCGACATGAGTGGGGCCCAATTGATCCCGCTAGAGGAAATCGAGGTTGATAATTCGATCAGCGATTGCAGAAACTGGCCACCTGGCTTCCGATTTCATCCGACCGACGAGGAACTCGTTCTGTATTATCTCAAACGTAAGATCTGTCATCAGAAGATCAAGCTGAACATGATCGGCGATGTTGATGTTTATAAGTGGCACCCTGATGAATTACCAGGTACATATATATATATATATATATATATATATATATATATTTTATTCCGATGTGTTGTTATCATATTATTGATTGCATGAAGAGGACTAGTGAGATGGTGTGGATATCTAATTTTATCTAATTTCGTAGGAAAATGATAACTGTTAAAATTGTTTGGATTGGTATAATTCACACAGGCCTATTCTATTTTGTTATGTTATTTTTTACTGAATACTTGAAACTATGCATTGGGTTCATGCTAAGATATTTTTGTTAGTTTCAGTTATACCGGCTGAAGTTAGTAATTGCTAGTATGAGTTTATTAACATGCTTCCAGGGGGATTTTGGTTCTATTAACACATTTCCTATAATATTGGGTAGATTTTGGTTCATGTTCCCTTTTGTAGAAACACAAGCCTTACAACCCTAAACCAAATACTTCTTTATAAAATTGTCTGGTCGAAATAATGTTAAAATCAATGTTGTAAATTTCTTCTCGGTCAATATCGAATCTAATATTTCTTTGAATGTTATATTAATATCAAATTTTGAATTGAAATATGTAAAAATTGCTGCGTACATGTAAAAGATACAGCCAACTTAAATAGTTGTCATGCATAATAATTGTCATTGTGCAAAATAATTGTTGGGCAAATTTTTGTACGGGCAAATATTTGTCATACAAAAATTTGCAATGCAATTATTAACTTTGCACTACTGACATGTGTTGGTTGTGCAATAACACAAAATATATGCATTTTTTTGTGTTGCACAACAAGTGTAATTCAAAGTTTTAAAAGGCAAAGATATACACACAAGATGTTTTTGTACTCGTGTGGTACGTAAGTTTCCAGATAAACATTACACGATAGACATGTCAAAGAATTAAACATGAAATAGTAAGCAGTGTTGAAGATTAAAATAAATGACATCAAACGTTCGACCTCATTATAATTTATAGTACATTTCGTTTTAAAACTTTCTAAATTCTGACATATACATTTTTTATTATTGTACAATATACACATAAACACAACATTTAGTTTTAGCAGTCCCTTTACTTTAAGACAACAATAGTAATACACCGATCCATTTAACCATACGAAGCAACAAATAAGTAAAATTTTCCCTTCCTTTCTTTACAATTTTTTTTTTAAAAAATTTGTTCAATTGATTTCAACTTGAAATGGATTTTGGAAATCAATTCCTAAATGGAATCCATTTTAGAAATCATTTCCAAAGTGAGATCTTTTTTAACAATCAATTTCATAATCTATTTTGAAATTGATTTTTCTCGATTGATTTTTAATTTTAAAATACATTACATGCTTTTTTTCGTTTTGTGTAAATGTGTTTTTTATCTGGTTGAACTTTGAACGAAATGAATAAACGATTAGGTTATTTTTAGACGGTTTATACTAAAATAGAGCAATATTTTTTTTACCCTACGTATGCCTTGTCAATTCGAGGCTTGCGACTCATATACAAAATATGCCTCATAGTTATCTGAGACGTATGTCTCAATAGTAAAATGCATTTTTGTGTAGGCTTCAAGACGTTTTAGCTCTGTATTTCCATGGGATGCGTATGGGTGTCAATTTTGTACGAGTATTCGTTGTGCGGGCAGGTTTAGAGTCGAAACCGTTCGTCTGATTCTCAGGACACAAATGAAAACAAGAATAAATATACAAAATTGAGTCTATTTGAGCTGTTCGATGAATTTTCTATTATTCGTACCAAGGTACAAGGCTTCAACCGGAACTTCAGGACCATGACCATTCCATCTCGGTTTCGTCAAAGATCAAGGTGGAATACAACCAAAATTTCTGTTATAGCCTATTAAACCATATTTGAATCCTTCATCGGTCTCAACATTTTCATTCATAACATCTTCATTTAATACGTCAACATTTTCCTTTACCAACACTTCATCGGTCTCAACATTCTCATCAATGTCTTGATACAACTATATTTGAAGTTGAAGATTGAAATTAAATTTCTACTTGAAATAAATAAGAAATTAAACAAGTGATTTTGTGAGTTGATATCTGTTTTGCTTAACTTTTCTATTGTTAGCTCTGAAGTTTTGTTTTCGGAACTGAATCTGATTTCTATTATCTTCGTTCTTCTTAATGTTTCCTATACTCCTAAGGATGATATAAATTGACCTTTGAATTGAAACGATACAATCAATTCATTTTGTGATAAAATCGATCAACCTTCTCACTATTGTTACTCGGCTTCATTAATAAAATCTGATTTGTACTTGATTGAGAGGTTTGTATAATAATTCAAGAATTATCATTCATTATCAAAGTTTTATTATTTAAACCAAATAATCTATAACAAACTAAAATAGCAAATTAAATTTATTTCTAATATCCTATACAGTAAATCTTAACATTGAGATTTGTTAATGAGTGATCCAGTGTTATCAAAGCCCTCGCCCAGGCGCGCTTAGGCTCCAAAAAGCCCTAGGCTCCAAGCTGGGGCTTTTTTGACTTCTGAGGCGCCATGGATGCACGAGGCGTCGGAAAAGCCCAAAAGCTTTGAGGCGCTGTAAAAGCGCACCTTGGGCTGCTTTGATGGAGAATTTTTTTTTTGGGTCTAATATGAGCCCAAACACATAACTTTCCTTCAATTTATCCGCACTCGGTTAAATCAACCAGCTCAAAAACAAATTCGTGCCCAGCCCCAACTTAAAATCAAATCGATCAAATTAAAATACGTAACCCAGTTCGAACTTCGAGAGCCGTCCAGACTGCTCGCCGCCTCATGCTCAAGGCTCTCAAAAAAGCCCCAGGTGCAAAAAAGTCCTAGGCTCCAGCTTGGCGCTTTTTTGCGCCTTAGCGCCTTAACTACCTTGGAGTGATCGAGTTCGATACATCGTATATGCAATTCCAAACAAATTATTCCTAATAGATTAAAATCAATATGTAATTTAAAAAAAATAATTAAACCTTTAAAAAACTAAAAGGGATTACTATATATGCCATCAAAATTGTATACAACTAACAATTAGAAAAATGAAAATTTCAATTTGGAGTATTTCAGTTTACAGAGTAACATTGAATGCAAATTGATGGGGGCTGGTGCACTGGAGTTTGAAGGCTTGGAGGCTCTAGGTTGGAGTGTGACAATAAGGGAGTGGCAGTGTTGACCGACATTTTCTTTTCCGATTTAGGTTTTAGTTCGTGATTATATTTTTTGCCCCTTAGGGTTGCCCAATTAGGTTGCTTGATGGGCCTTGATGAAGGACCAGGCCGAATACGAGGATGGTCAAATTCCAAGGTGGGTTCGAATTTGGTGTCATGGTTGTATAAACTGGTTTAATAAAGTCCAATATGACTAATAAAACACTATGATATCAGTACAAGAAAATTGAAAGGGAGTCATCAACTGCCCTATGGACATCATGTGGTTAACCCTGCACATCAACAGTGCACATACTAAAAATACTAATGTGTGCATACATGTGCTGTGTGTATTCTTGTCTCTAGGATACACAGCTATAAAAACACTAGTGTTTTATTGTTAACACTGAAATTATGTCTTCAAATTCACTCAGCTATCAACTCCCATATAATCAGCTGTTTTTCTTTTTTCTTTCGTGGATACAGTCTAATAACTTCATTTTTAAATTTGTGTAGGAAAATCGTTGTTGAGAAGCGGTGATAAACAATGGTTCTTCTTCAGCCCTAGAGACAGGAAGTATCCAAACAGTTCAAGGTCTAATCGTGCTACAGCGAATGGATACTGGAAGGCTACAGGCAAAGACCGTACCATCTCTCAAAACTCCAAACCTGTTGGTAACAAGAAAACTCTTGTCTACTACCATGGGCGGGCACCAAAAGGACAGCGCACTGATTGGGTGATGTATGAGTATTCATTAGCTGAGCAAGTGCTTATTAATCTAAAAAACGTGCAGGTACTAAAACAGTTGTCAAATTTTATTTGTAATGCTAAACAGTAAAACCATTGTCCACACTTAGCCTCATAACTAACATTCTGCCTGTATGAATACTATCTTTGAAGAATGGAATGTTGTTGGTAAACAGTTATATGTGTGTTTATAAGCGAGGTAAAATGGACAAATAATTGAATTAGGGGGCATAATACCACAGTTGGGCATAGGACCAATGTGGAGAGGAGGGCGTCTTCCAATGTGGCATTGCATAGATTTTAATATCTAATGTTTTCTTATATCCATATCTTACTTTTGCAGGATTATTTTGTTCTATATAAGCTTTTTAGGAAGAGTGGACCTGGTCCTAAAAATGGAGAGCAATATGGTGCACCATTTAGAGAAGAAGAGTGGGATGAAGATGTTGTAGATGACAATCACATGAATCAAACTAACAGCAACTTCCAAATGATTGAAAATCCGCCTAACAATTCAGTTGACAATGAATTACCAAACGGGGATATGAACGCAAACCAAAATCATGATTTGGATAGAATGTTGTCACAAGTAGCAACTGAGCTCGATGTCGTTCCACTAAATTCCGAGTTGCATTCTGTGAATAATGGTTCTGGAAACCAGGTTGATAATAATGCAACAAACGAGAGAGCATTGAATCTAGAGCAGAACTCACTTCCAAGTTATGATTTAGAGGATATTTTGCTGCAGCTGTCAAATGAGCAAGATGTGATGCATCAACTTCCCGATTCTACTTCCAATGCTCCAAATGTAAGTAAATATCATCACAAATTGAACTCAATTACTTCACTCAAATTTTAGTCGAAATAATGACAAAAACCAGTTCAACTGTATTGATGCACGTGTTTGTGAATCAACAAAACATTTTTCAAACATCATGATGAAATGTTTTACATTTTAATTCTTAACTGAACTTAGTTTAGGTTTTGATTCTGCAACATGCTGATTGATGCAGTATCTTTTTATTCAGTAATGTGGTCTAATTTGTACTTCCAATATCAGATGTTACAGGGCAATGGTGCAAGAGATGATGATCTTGATATAAACAATTTTATGACCCTATCGCATTACATCAATGAAGTCCCTGTCCAACAAACTAACGCTGAAGAAGAGTATCTTGAAATTGAAGATTTAATAAATTCAGATTGTCAAGCTCAGAATCCAGAAAATATGAACTACAACAGTGAGCTCAATCATATTGGTGATCAGTTTGTTTTTCCTGATGAATATTTTGATACACAGATGTTTTTAGAGGATGCTATGGGACCTAATTCGGGAATGAATCAACATAATACATACTGGAATGATTTTCTAAACAATGAGCAACAGATGCCAGCTTCTAACATCACTACAGATTTTTCGGGGCTTGAGCAACATTTTAGCTCCTCGACTACATCTGTAGAGCTATGCACAAATGTTACTGCATCATCTTCAGGTGTGATTTCGTATTATGCACATATTTATATGATGCAATGATGGGTTCCAGTCAGTATACTTTATTTCTCATTCTTATATTACTAATTATGTAGGTGTAATGGGTGCTAATAACAATAATACAACAGAGTCATGGTTTGATTCAAATCTTTCAGCATTCTTAGGTTCTATCCCTAGTAGCCCAGCATTTGCATCTGAAAATACACTACTTACCAAAGCACTCAATCGAGTTTCTAGCTTTAGAGGAGGTCGTAATAAAGAAATGAGAGATACGTATGCTGCAGTTAATAATAACAATGGTATTATTGTGCGTAGAAGGCGGCAAAATGGTGGATTTCTATTTACCTCTTTTCTTGTAGGCCTGGGAGCAGTAGTTTGGTTTTTAAGTATTGGCATCACTGTACAGATCTTCAAGGGATTCTGGAATAGATACTTCTCTTAAGGACGCGCCTGATAATTATAACTATTAATGTACAATTTTAGAGTTTTTGGTGGTGGTGATGGAATTTTTATCGTGGTATTTATGCTATCTATTACTGCTTTTTTAAGTTGGGTTATAGTCACTGTATTTTATTTTCTCCAAGCATGAACACTATGTAGGCTAATGCTGTGAGTGAGTCTTTTGGTTATGCAGATTGATTCACATATTCAAGTTGAAGAACATGGGAAGATAAATGCCACTAGGCAAGTAAAACAGATTGTGTAAGCCCAAATAATGCGATGCAGGCTTTTTAACTCTTGTTCACTTTTTAGTATTTATCTATACTAATTGAATTATGAATC

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020262785.1	3.6e-126	NAC domain-containing protein 17-like
Swissprot	Q9XIC5.1	2.5e-71	Protein REGULATORS OF AOX1A 2
trEMBL	A0A5P1FXJ7	2.6e-126	NAC domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G34190.1	37.78	1e-82	304	anac017;NAC017	NAC domain containing protein 17

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G01408	AT1G34190.1	577	276	21	32	571	18	548	37.78	1e-82	304
AfisC6G01408	AT1G34180.1	606	285	21	20	571	2	557	35.81	4e-80	296
AfisC6G01408	AT1G34180.2	614	292	21	20	571	2	569	34.85	1e-77	288

Ortholog group

Species	Genes
Allium cepa	g243038.t1; g243040.t1
Allium fistulosum	AfisC6G01408
Allium sativum	Asa8G05030.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02365.12	NAM	Family	31	157	93.0	1.4e-26

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0016021	C	integral component of membrane
GO:0000976	F	transcription regulatory region sequence-specific DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005516	F	calmodulin binding
GO:0005730	C	nucleolus
GO:0005789	C	endoplasmic reticulum membrane
GO:0008283	P	cell proliferation
GO:0008361	P	regulation of cell size
GO:0009555	P	pollen development
GO:0009611	P	response to wounding
GO:0009620	P	response to fungus
GO:0009819	P	drought recovery
GO:0009737	P	response to abscisic acid
GO:0009744	P	response to sucrose
GO:0009751	P	response to salicylic acid
GO:0009867	P	jasmonic acid mediated signaling pathway
GO:0010114	P	response to red light
GO:0010200	P	response to chitin
GO:0010224	P	response to UV-B
GO:0010228	P	vegetative to reproductive phase transition of meristem
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0031930	P	mitochondria-nucleus signaling pathway
GO:0043424	F	protein histidine kinase binding
GO:0046982	F	protein heterodimerization activity
GO:0051091	P	positive regulation of sequence-specific DNA binding transcription factor activity
GO:0070301	P	cellular response to hydrogen peroxide
GO:0071365	P	cellular response to auxin stimulus
GO:0071470	P	cellular response to osmotic stress
GO:2000377	P	regulation of reactive oxygen species metabolic process
GO:0090602	P	sieve element enucleation
GO:1900057	P	positive regulation of leaf senescence
GO:1900409	P	positive regulation of cellular response to oxidative stress
GO:1900426	P	positive regulation of defense response to bacterium

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network