result

Gene information

Detail information of AfisC6G01480

Location

Gene	Chr	Start	End	Strand
AfisC6G01480	chr6	238253839	238255623	-

Sequences

CDS

Protein

Gene

>AfisC6G01480
AGAAGATCAAGTTCTACCGAAAGTACTGCTAGGGAAACTAAGCAATGTCGTCTAAATCAGCTGAAAGTTATTTGATTGAAGAGATTACGAAAGGAAAGGAGCTAATGAATCGTCTTAATACACTTCTTAATCCACATGACGATAAATCTTCTGATCTTTCTACTAAAATACTCGAATCCCTTTCAACTGCACTTGATCTTCTTGATCCAAAAGAAACAACTAGCCTTGATGTTGTGGCCACTGCAAATCAAAGCACTGCTTCGAATTTTAGTTTGAAGAGAAAAAATCAAAGCACAGATGCCCCCTCACTTAGGAGAAGGTCTATATACATGTGTTTTGCACAGCTATCTTCTGTATATGCAAAACACAATTTTAATGCATCTTTGAAGTGAACAATATTGTTTATACATGCTTTTAAATATATTTTTATATAACGACCAGGAAAGTTGGAGATTCAAAGATGGTGTACATGACATCAGCGCCACATTGTGATGGTTATCAGTGGAGAAAATATGGACAGAAGCTGATTTCTAATTCTTCTCATCCGAGGTAAGCATTTATTGTTTTCTAAATCAGTTTGTTAAACTTTGAGTTATAAGTAATATAAGAGAAGAAAGCCAGTGAACTAGTATCACTTATCAATTTAAGGTTAATTCACATCAAATTATGTTTTCACCCATTCTTAAAATATACGGAGAATCAGATACCATCGAATTTTCGGGTTCAATTCCTCCGTTTTCAAGTTGTGTGCCATCATATCCCTATCAAATCACAGTCATTTATTATTTGTTTAAAAAATTAAAAAGTGTGATCCACATCTCGAATGAATGGCTGAATTTCAATGGGGACAGATGTCAGAGGAATTGATATGCGATTTTTTTTCTTCCAAGAGTAACTATAAACTCATTGAATTGGATTAGTAATCTGCAAGTTTTCTATCCCTAATTGGAGGTCATAATAGTGTATAGTTCTGCAACTCTATTAAACTAAATTACATGTCTACAGGACATATTACAGATGCACATATAAAGATGATCAAGGATGTCCGGCGACAAAAAAGATACAACAACGACAATGTAATGAGATGTACAACGACTCTCCTATGTTTCAGGTCATTTACGAACATGAACACTCTTGCAATTCAACCGTCACAGATTCAGAAAATGTGTTTTATCATGATCAATCTAGTTTTATTATGTTTGATGCCAATGTATCTTCCCCCTTAAGTACCATTAATATTAATAAGATCATTGATGCTGATGATCACGATGAACATAGATTTCCAGAAGTGGACACTGAGAACTTGTTTAATGAATTAAGCTGTGGGCTTAAGGTTGAAAATACCAATATTATGAATTGTGAATCTGTGAAGAAGATGGACAATTTCCCAATGAGTCCTAATTGGAAACCATATTATGATTATGAATTGGACTATAATCCAGGCATGGAGATTTCACAGAGCTGATATTGATCTAATTTTTTTACATAAGGTTTAAGTTGCCTCATTTTAATGAGTGATGATTGTGTGCGTGGTAATAATATGTTCTTTAGAGTGCAATTGTATGGTTTATTGAAGCAATTGTTAGATTTATTGGAGCAATAGTTTTCATGATTAAATTCCAAATGTAATCTGTTCAATTATATGTAAGAAACTAGATTGAGACCCGTGCTTCGCACACGGGTACGTGGAGGTTTTAATGGTGGTGTATTATGTGAATTCTTATTCATGTTGTCTTGTATTTGTTTTATTATGATGCAAAGCTAAATTATAAGGTATATGGTATT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020241688.1	1.5e-24	probable WRKY transcription factor 46
Swissprot	Q93WY4.1	4.1e-08	WRKY DNA-binding protein 12
trEMBL	A0A8B7MT22	3.2e-21	WRKY DNA-binding transcription factor 70-like isoform X1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G66550.1	29.73	1e-16	83.6	ATWRKY67;WRKY67	WRKY DNA-binding protein 67

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G01480	AT1G66550.1	222	124	8	11	218	10	213	29.73	1e-16	83.6
AfisC6G01480	AT1G66550.2	217	124	8	11	218	10	208	30.41	4e-16	82.0
AfisC6G01480	AT1G66560.1	220	121	8	11	218	10	208	30.00	8e-16	80.9

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03106.12	WRKY	Domain	109	172	79.3	1.8e-22

Gene Ontology

Accession	Ontology	Name
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0006952	P	defense response
GO:0005516	F	calmodulin binding
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0030010	P	establishment of cell polarity
GO:0009555	P	pollen development
GO:0009685	P	gibberellin metabolic process
GO:0009942	P	longitudinal axis specification
GO:0010200	P	response to chitin
GO:0044212	F	transcription regulatory region DNA binding
GO:0043565	F	sequence-specific DNA binding

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network