result

Gene information

Detail information of AfisC6G01513

Location

Gene	Chr	Start	End	Strand
AfisC6G01513	chr6	244133877	244135313	+

Sequences

CDS

Protein

Gene

>AfisC6G01513
ATGTTGTCTCAGTCAGCAAAAAGTTATTTGATTGAAGAGATTACGAGAGGAAAAGAGCTAATGAATCATCTTAATACACTTCTTAACCCAGATGCCAATAAACCTTGCGATTTATCTAGTAAAATACTTGAATCCCTTTCAACTGCTCTTGACCTTCTTGATCCAAAAGAAGCAACAAGCCTTGATGTTGTGGCCACTGCTAATCAAAGCATTGCTTCCAACTTTAGTTTGAAGAGAAACAATCAAAGCACAGATAGTCCCTCACTTAGGAGAAGGTACATATACAAGTGTTTTGCACAGCTGTGTTTTCTATTTATGGACAATACAATTTTGATGCATCTCCTAAGTGAACAGTATTTCTTATACATGCTATAAACATATTTTTTTTACATAACAAACAGGAAAGTTGGAGATTCAAAGATGATATACATGACATCAGCGCCACATTGTGATGGTTATCAGTGGAGAAAATATGGACAGAAGCCCATTTCTAATTCTTCTCATCCAAGGTAAGCATTTATTATCTTCTAAATTTATTTGTTAAACTTTCAGTTCGATGTACGTAGCATAAGAGAAGGAAGTTGGTGAAGTAGTACCACATATTATATTTAAGGTTTAATTCACACCAAATTTGAATAGTAATTTGCATGTTTTGTATAATATATCCTTGAATATGGAGATTAATATATTGTTTTTACAATTGTACTAATGTATATAAATCAAATTGTATGTTTACAGGACATATTACAGATGCACGTATAAAGATGATTGTGGATGTCCGGCAACAAAAAAGATTCAGCAACAATGCAATGAGATGTACATGTTAGAAGTTGTCTTTGAACACGCTTTGCTAGATAAGTGGAGATGTGATGCAGTATGCATGTTGTATACTGGTTTACCGAGTCCTATGTTTGGGTAGTTATAGATCCTACTTTTATGCTTTGCATGCAGTTGTATCTGCCTATATATATAGGCTATTTGTTTAATGAATAATAAAAAAACAGTTTTTGCTTTCGCTTACTATTACAATATATTGTTCTTTGTTGCTTCTGTTCTCAACAATTGGCATCAGAGCCTTGCGCTCAATTTTTGGGTTTTCCGCTTACCAGCGGCGGTGGCCTCCATGCTGCTGTCCGCTGGGTATTGTTCTAGTATAAAAGGCTGTTTGCAAGAGAAGCTGAAGTACATGTTAGAAGCCAGAATGATGCCCACTACCATATGCTGGAAATGGCCGAGGAAGAAGCCATCGACAATCAGTTGAGAAAGAAAGAGCTAGAGATAAGCTGGACTGCGAACAAAATTGTGGAGCTAGAGAACCGGCCCGTGCGTAATAATAAAAAACGAGTCCTTGACATGGTAGGCGAGGGCGATGACGCTGCAAGTGCAAATACAACAGCCGTAGCTGGCATCAGTTCGAAGAGCGTCGGACCAAGCTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_017697073.1	4.5e-18	probable WRKY transcription factor 70
Swissprot	O22176.1	1.8e-08	WRKY DNA-binding protein 15
trEMBL	A0A8B7MT22	3.2e-18	WRKY DNA-binding transcription factor 70-like isoform X1

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G56400.1	29.27	1e-12	70.5	ATWRKY70;WRKY70	WRKY DNA-binding protein 70

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G01513	AT3G56400.1	164	103	2	10	161	11	173	29.27	1e-12	70.5
AfisC6G01513	AT2G40750.1	203	102	6	3	161	8	205	25.62	5e-12	68.2
AfisC6G01513	AT1G66550.1	150	77	7	11	149	10	149	34.67	8e-12	67.8

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03106.12	WRKY	Domain	109	163	69.2	2.6e-19

Gene Ontology

Accession	Ontology	Name
GO:0001046	F	core promoter sequence-specific DNA binding
GO:0005516	F	calmodulin binding
GO:0005634	C	nucleus
GO:0010200	P	response to chitin
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:1901141	P	regulation of lignin biosynthetic process
GO:1904369	P	positive regulation of sclerenchyma cell differentiation

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network