result

Gene information

Detail information of AfisC6G01534

Location

Gene	Chr	Start	End	Strand
AfisC6G01534	chr6	248390051	248391207	-

Sequences

CDS

Protein

Gene

>AfisC6G01534
ATAATGTTGTCTCAATCTAGAGCTAATGAATCATCTTAATACACTTCTTAACCCAGATGCCGATACACCCTGCGATTTATCTAGTAAAATACTTGAATCCCTTTCAACTGCCCTTGACCTTCTTGGTCCAAAAGAAGCAACAAGCCTTGACGTTGTGGCCACTGCTAATCAAAGCATTGCTTCCAACTTTAGTTTGAAGAGGAACAATCAAAGCACAGATAGACCCTCACTTAGGAGAAGGTACATATACAAGTGTTTTGCACAGCTGTGTTTTCTATTTATGGACAATACAATTTTGATGCATCTCCTAAGTGAACAGTATTTCTTATACATGCTATAAACGTATTTTTTTACATAACAAACAGGAAAGTTGGAGATTCAAAGATGATATACATGACATCAGCGCCACATTGTGATGGTTATCAGTGGAGAAAATATGGACAGAAGCCCATTTCTAATTCTTCTCATCCAAGGTAAGCATTTATTATCTTCTAAATTTATTTGTTAAACTTTCAGTTCGATGAAGCATAAGAGAAGGAAGTTGGTGAAGTAGTACCACATATTATATTTAAGGTTTAATTCACACCAAATTTGAATAGTTAATTTGCATGTTTTGTATCCCTAAGTGGAGATTAATGTATAATCTTACAACTGTACTAATGTATGTATAAATTAAATTGTATATTTACAGGACATATTACAGATGCACATATAAAGATGATCAAGGATGTCTGGCAACAAAAAAGATACAACAACAATGTAATGAGATGTACAGCGACTCTCCTATGTTTCAGGTCATTTACGAACATGAACACTCTTGCAATTCAACCATCACAGGTTCAGAAAATGGGTTTTATCATGATCAATCAAGTTTCAGTATATTTGAAGCCAACGGATCTTCCCCCTTAAGTACCATTAATATTAACAAGATTATTGATGCTGATGATCACGATGAACATAGGTTTCCAAAAGTGGATACTGAGAACTTGTTTAATGAATTAAGCTGCGGGCTTAAGGTTGAAAATAACAATATTATGAATTGTGAATCTGTGAAGGAGATGAACAATTTCCCAATGAGTCCTAATTGGAATCCATATTATGAATATGAATTGGAGTATAATCCAGACATGGAGATTTTACAGAGCTCATTCATTTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020244498.1	1.1e-18	probable WRKY transcription factor 46
Swissprot	Q93WU7.2	3.9e-08	WRKY DNA-binding protein 58
trEMBL	A0A2T7E4J2	3.1e-18	WRKY domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G80590.1	31.41	8e-15	77.8	ATWRKY66;WRKY66	WRKY DNA-binding protein 66

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G01534	AT1G80590.1	156	95	3	50	197	43	194	31.41	8e-15	77.8
AfisC6G01534	AT2G40750.1	88	45	2	66	153	132	213	42.05	2e-14	76.3
AfisC6G01534	AT2G46400.1	88	47	2	89	175	105	188	40.91	2e-13	72.8

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03106.12	WRKY	Domain	89	151	78.5	3.2e-22

Gene Ontology

Accession	Ontology	Name
GO:0005516	F	calmodulin binding
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0010200	P	response to chitin
GO:0044212	F	transcription regulatory region DNA binding
GO:0043565	F	sequence-specific DNA binding
GO:0044763	P	single-organism cellular process
GO:0048522	P	positive regulation of cellular process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network