result

Gene information

Detail information of AfisC6G01562

Location

Gene	Chr	Start	End	Strand
AfisC6G01562	chr6	254714422	254716108	+

Sequences

CDS

>AfisC6G01562
ATGGATAATTTTGGTTGGGATGATCCATCACCAAATATATGGAGCAATCAATATGAAAGTAATATTTCTGGATCAGAAACAAATTACTGCATTTTAAGCAGTAAATCCGGGTTCAATGAATCATTGTTCGCCTCTCCAAGCTTAGAGATGCAACTTGATAATGATCAAGTTGACGAAATGGTCCAGTTATTAGTATCTCCGTCCTTCAACTCGGCAGCCAATAATTCAATTCTTGACAATATCAACCCTGCATTGTATCCTTTACCCGAAATTTTTGACCAAACTTCTCAAGAACTGCAAATATACAATGCATCAAAAGAGAATGTTTCAGTGCTGTTTAACCCAACTGGAAGCAGTTATCTCTCATCAGGAGAATCCGAGGCAACATCACAATGCTCTTCCCAGTCTAATCCTACAAAAAGAAAATTTGAAGACATGCATTATAATTCTTCTCAATACTTGCCGGTAAGTACATCTTCAGGTACTACTGCTGCAGAAAAAGGATTCCAGATACATTTTGACAAATCCCAGAATTCGAAAAAACCAAAACAGGAGGAATGTTCAAGCAAGAACATTGATTTTCGGCAGGAAAGAAGCCAAAGGAATACTAGTTACGAGCCTGATACGGAAGCAATAGCTCAAGTAAAAGAAATGATATACAGAGCAGCAGCTATGAGACCAGTCAATTTAGTATTGGAAGAGGCAGCAGTAGCTGAAAAACCAAAAAGAAAGAACGTGAAGATATCAAGTGATCCACAAACAGTGGCAGCCAGGCATAGAAGAGAAAAAATAGGTGAAAGATTAAGGATTCTTCAAAGACTAGTTCCTGGAGGCAGTAAAATGGACACTGCTTCGATGCTCGATGAAGCAGCGAATTATTTGAGGTTTTTGAAGTCTCAAGTTAGTGCACTGGAAAATTTGGGTACAAATCCTTCATCATCAGATACTTGTTTTCAAGTGCCATACAATCTGCAATCTACACTTTTCAATCCTTAA

Protein

Gene

>AfisC6G01562
CTTCTTTATAAGCTCACTTCCTCTACAGCAACTTCACATATATCGATTCAAAAAAAAAAAGGAGGAAAAAAAAATCGATTCTCTTCTCTAGAAAAGTGCATCCCTTTTCACTGCCGATTAATTATATTCAAAATTTCTCTCAATCTTTTTCCTGGATTTTGTCAAGAAGCCAAAGAAGATTATATCAAATAGTCATTGAAAGATCTAGCAACTAGAGGTGAGTAAACATCAGACGTATATTCCACGGTAGCCTACTGTCGGTAGGTGCAAGTAATTTGCGATTTTCGTGCTTGTTTAATTGTAAGTTACTATTAAATGTATACATCCATAACAGTGTTGGGATAATGACTGACGCTGCTATAGTTTTGTATACACGTTTTTATAAGATTATTAACTGTTCAATATTGAAAAAAAAATTCCCCTTTTTTTCTAGGATTAATGGATAATTTTGGTTGGGATGATCCATCACCAAATATATGGAGCAATCAATATGAAAGTAATATTTCTGGATCAGAAACAAATTACTGCATTTTAAGCAGTAAATCCGGGTTCAATGAATCATTGTTCGCCTCTCCAAGCTTAGAGATGCAACTTGATAATGATCAAGTTGACGAAATGGTCCAGTTATTAGTATCTCCGTCCTTCAACTCGGCAGCCAATAATTCAATTCTTGACAATATCAACCCTGCATTGTATCCTTTACCCGAAATTTTTGACCAAACTTCTCAAGAACTGCAAATATACAATGCATCAAAAGAGAATGTTTCAGTGCTGTTTAACCCAACTGGAAGCAGTTATCTCTCATCAGGAGAATCCGAGGCAACATCACAATGCTCTTCCCAGTCTAATCCTACAAAAAGAAAATTTGAAGACATGCATTATAATTCTTCTCAATACTTGCCGGTAAGTACATCTTCAGGTACTACTGCTGCAGAAAAAGGATTCCAGATACATTTTGACAAATCCCAGAATTCGAAAAAACCAAAACAGGAGGAATGTTCAAGCAAGAACATTGATTTTCGGCAGGAAAGAAGCCAAAGGAATACTAGTTACGAGCCTGATACGGAAGCAATAGCTCAAGTAAAAGAAATGATATACAGAGCAGCAGCTATGAGACCAGTCAATTTAGTATTGGAAGAGGCAGCAGTAGCTGAAAAACCAAAAAGAAAGAACGTGAAGATATCAAGTGATCCACAAACAGTGGCAGCCAGGCATAGAAGAGAAAAAATAGGTGAAAGATTAAGGATTCTTCAAAGACTAGTTCCTGGAGGCAGTAAAATGGACACTGCTTCGATGCTCGATGAAGCAGCGAATTATTTGAGGTTTTTGAAGTCTCAAGTTAGTGCACTGGAAAATTTGGGTACAAATCCTTCATCATCAGATACTTGTTTTCAAGTGCCATACAATCTGCAATCTACACTTTTCAATCCTTAATATCAAAAATGATTATCATCAATTGTGTTATCATTAGACTGCTTGCTCTTTTCCTAACAATTAATATAATCCTTGTGTCAGTGTTACTTTTGACCATTATCATTAGCTTTTGATGTTCATGGTACTCTTTTACTTTTAACTTTAGCCATGCAAACCCTAGTCCAGAAACCAATACAATTATCATAGCACTATGATTAGTAACCAATATTTACTGTTGGGAAGTAAAATATTGATATTAGGAGGAATAATGATG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_009395775.1	4.8e-51	PREDICTED: transcription factor bHLH87-like
Swissprot	Q8S3D2.1	2.7e-38	bHLH transcription factor bHLH087
trEMBL	A0A804IMJ6	3.5e-51	(wild Malaysian banana) hypothetical protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G21330.1	65.03	2e-45	179		basic helix-loop-helix (bHLH) DNA-binding superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G01562	AT3G21330.1	143	43	4	168	307	196	334	65.03	2e-45	179
AfisC6G01562	AT4G00120.1	91	34	1	215	305	88	175	59.34	1e-25	114
AfisC6G01562	AT3G50330.1	98	34	1	208	305	88	182	62.24	7e-24	108

Ortholog group

Species	Genes
Allium cepa	g237488.t1; g263369.t1
Allium fistulosum	AfisC6G01562
Allium sativum	Asa3G04162.1
Arabidopsis thaliana	AT3G21330.1
Oryza sativa	LOC_Os01g51140.1; LOC_Os01g51140.2

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
-	-	-	-	-	-	-

Gene Ontology

Accession	Ontology	Name
GO:0001046	F	core promoter sequence-specific DNA binding
GO:0001228	F	transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0006366	P	transcription from RNA polymerase II promoter
GO:0005739	C	mitochondrion
GO:0005634	C	nucleus
GO:0046983	F	protein dimerization activity
GO:0009555	P	pollen development
GO:0009733	P	response to auxin
GO:0010500	P	transmitting tissue development
GO:0045893	P	positive regulation of transcription, DNA-templated
GO:0048462	P	carpel formation
GO:0048766	P	root hair initiation
GO:0048767	P	root hair elongation
GO:0080126	P	ovary septum development
GO:2000012	P	regulation of auxin polar transport

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network