result

Gene information

Detail information of AfisC6G01660

Location

Gene	Chr	Start	End	Strand
AfisC6G01660	chr6	271154964	271158957	-

Sequences

CDS

>AfisC6G01660
ATGCCTGCTTGGTGGCCACGCAAAAGCAAATCCAAACCCAAAAAAGGCGAATCTGCAAGCTGCAGTTCATCCCCGCACCCGAGGACTGATGAAATCCCCAAACTCAAGACGTCAAGCAATAATAAGAAGGAGAAAGCGAACAGCTTCGATGAGGCTGTAGCGAGAAAGGCAGCCGCAGCGGTAAGTAACGTTCATGGTCAGGTGTTTGCATTCGGGCAGCACCCGCTTCCCCGGCCCATGTCGTCGACGTTGCCTTCGGTGCTGCGGGAAGTTTCAGCTGCGGGTTCGGTATCTGCGTCTGAGTCCAGTGTTAGTTCTTCTGGTTCTGATGAGACTCCCGATCTTACCTTTTATATCTTACCTTTTATAGGTGGTGGTGTGAAAATGTTTGCATTTACATCATCGCAATGGGAAGAATTTCAAAGACAAGCTCTGATCTACAAATATATAATCAGATGTGTTCCTGTCCCTTCTCATCTTTTATTCCCTTCCACTCCTGCTGTTTATTTCTCTGGAGGAGGCAGTATGGATCCAGAACCGGGGAGATGCAGGAGAACAGATGGGAAGAAATGGAGATGTGCAAAAGACGCGGCGCCTGAGCGGCAGTACTGTGAAAAGCATTTGATAAGAAACAGACCTCGTTCAAGAAAGCTAGTGGAACAATGCAAGACTAAGCACAAATCTAACGCTGGGTCATCTAGTACAAATGCCGAAGACAGCGTCGAGAATATTAAAACGGCAATTGAGCTGAATGATTCGGTGCAGACTAACAACTTTGGCGAAGAGAAAGGAGAGTGGCCAAAGAGCAGCTATTCAGAAACCCAGGCTTCAGATAAACAACCTGATGCACTGTATTCTTCCATTAACACAGGCTTAAAATTCAACACCATAGGTGCGCACTCAGTCATGCAACGCTACACTGAGTTACCGAATTTGAACTATAACGACACAAACAACGTTTGGAACCCATTCATTCATTCCACTGGCTCTGCTGACTGCGATAAACCAGCACAAACTTATTTTGATGCCTGGTCTACTGAGAACAATAGTGCTAATCTTCCATTGCCAACCCTAAGCTTATCGATCCCTACTGCAATTGGGGAAGACTCCACTAAGGATATGAAATCACATCAATTGTATAACTGGATGGGGCTTGATTCTACTGTTGGGGGGCCGTTGGCTGAAGTGCTTCATTCTAGTAATTTGACTTCTCATGAGTCAAGTCCCAGAGAGAGTTTTGTTTCTTCGCCTTCTGACGTTTTGCAGAAGGCCATTGCTACTCTCTAA

Protein

Gene

>AfisC6G01660
CCGATCTTCTCTCTCCTCCAACCACTCTCTCTCTCTCTATCCTCTTGCTGAAAGAACCATGCCTGCTTGGTGGCCACGCAAAAGCAAATCCAAACCCAAAAAAGGCGAATCTGCAAGCTGCAGTTCATCCCCGCACCCGAGGACTGATGAAATCCCCAAACTCAAGACGTCAAGCAATAATAAGAAGGAGAAAGCGAACAGCTTCGATGAGGCTGTAGCGAGAAAGGCAGCCGCAGCGGTAAGTAACGTTCATGGTCAGGTGTTTGCATTCGGGCAGCACCCGCTTCCCCGGCCCATGTCGTCGACGTTGCCTTCGGTGCTGCGGGAAGTTTCAGCTGCGGGTTCGGTATCTGCGTCTGAGTCCAGTGTTAGTTCTTCTGGTTCTGATGAGACTCCCGATCTTACCTTTTATATCTTACCTTTTATAGGTGATCATTCTTACTATTCTGTTTTTTTATAATTTAGGGTTTTGGGTTATTTGGTAAACTGTTAAAATTCTTAGATTCAGAAATTTGTTGTTACTTCATTGGCAAAAACTTCCAACCTTATATTCAATGTGGTAGTTATTAAGTTGGATTTGATTTACAAAAATTAACAACCCAGGTTGGAAATTTGCAGGTTTGTAGTGTTTGGCATTTTACAGGTTAAGTTTCAAGAGCTAATGATTTTGCACTTGGCCATGGGTTTCATATAGTAAGTCCATAGTATTATGATTGTTATGTGCAGTATCCATGATTTTTTAAGCAAAAAATAGTCTCACAATATTATGAATTTTATACTATGAATATTTAGTCCTACCGTCCAACCGAAGGAAGATCCTATTGCACTAACCAACCCCATCCAAACTTGTATCTGTTACATCAACAATATTTTTGCTCTTATACTAGATCATATCATGTCCAATAGAAAGCTTATAAGCTGATCACTAATTATGTTTTGATGAACACTGGTTTTGAAATTGGACAAATCTCAAGGTAGATTTCACATACTGTACGCACTTCTCATTGCACCATATTTGAACACATTGTTGGTGAGCTTACTGAAATTGTTGATAACAAATGATAATCACCATTACTTATCTAAATATATGCTATAGGCTGAATATATCATATTTTATGATTTTTTCATTCATATATCCTTGTTATTTTCCTTTATAGCCAATACATCTGTGTACCTTGAACGTCATGAGAAGCTGAAATAAAACAGCCATTTGATTGTTTCACATATGTTTTAGGTGCTTTAGTCTATTAATGAGAGAGTTTATTTAACTAAAATTTGGATATTGAAGACTATGCAACTACATACAAAGATAAAGACCAAGGTTTGATGCTTGTTGGAATGGGCTATAGTGCATGCAAGAGGTTGTGGATCATGAGATAGCAATGTAAGATCCCATATTAGTGCAAGTGGACATATTAGGAGCACAGACAATATTCCATATATGATGATGCCATTGGACATTGGGTGATTTAAATCTCAAACTGTCCCAAGCTGACTTAATAGAGAATTTACCATTGATTGTTGGAAGCCGCCACCGGTAATCTTCATTTCTATCCTTGTCTATGCTAATGTTTTCAATTATATTACATATATTGACGGGTAAATTAGACGAGTTAAGACACCAGTTAGATTCTGAAATCAATGCAGAAACTTCTTTATTACTACCTCCAACATTGCTAATATACTGCCAGCCTTGCTTATGAATTAGAGTTTCTCCATGTAGCCATGGATCAAACCAAATATTAGCACCTCTGCCATTTGCAATATTCCTCTTTATAAAATAGCGGCTTGTCTTGTGTAGCCATGGAGAAACATGGCCATTATGCCGAAAATAATCTTTTTGCTACATCAACTACACCTCCACATGCTCGAAGAACTCGGAGTTCTTCAACCATCCCATAATGTGTTGTGAATCAAACAATTAAAGATACAATGTTCTCCGTTTATTGACATGACTTTACCATGACAATCTACAAAATCTTCACCATTTATTATTTCAATTTCATCATCACATCCTACTTCTATTACTGCACACTATTACCATAGGTAGACACACTTATCAATAGTAAGTGCGTTATTTATTTATTAATTTGCATCTGTAACGTAATATTTCACATTTTCAATAGGGGATAGAAAAGGCTCGATTCCAAATAAACAGCGCAGCAGAGCAGATCATAATTTGTTGTGTAGTAAAAGTGCACTTTATATCCAAATTTTGTCCATTTCTACGGTGTGGTACATATTTGTTGGAGGCATGGGAAGCAGCACCAACTTCATTTATTTGTTTATTTCCTCCTTTTCTATTTCTTTATCAGTATCTCAACCACTATTTCACTCTACTTCTCCATTCATAAAAATATGTTTCCTTGCTACCCACATTCTTCAAGTAAGCAAATTCAATATATGTTTTTGTACACTGGACCATTTTTATCATGTTAAATCAACTGTTCCTTTTCTTTTCTTTGATCACAGGTGGTGGTGTGAAAATGTTTGCATTTACATCATCGCAATGGGAAGAATTTCAAAGACAAGCTCTGATCTACAAATATATAATCAGATGTGTTCCTGTCCCTTCTCATCTTTTATTCCCTTCCACTCCTGCTGTTTATTTCTCTGGTATCAGCACATACACAAATTTCCATATTTATATATTTTTTTATTTCGTACATATTGTTGTTTAAAAGTAAAATGAAAGTACAGGAGGAGGCAGTATGGATCCAGAACCGGGGAGATGCAGGAGAACAGATGGGAAGAAATGGAGATGTGCAAAAGACGCGGCGCCTGAGCGGCAGTACTGTGAAAAGCATTTGATAAGAAACAGACCTCGTTCAAGAAAGCTAGTGGAACAATGCAAGACTAAGCACAAATCTAACGCTGGGTCATCTAGTACAAATGCCGAAGACAGCGTCGAGAATATTAAAACGGCAATTGAGCTGAATGATTCGGTGCAGACTAACAACTTTGGCGAAGAGAAAGGGTAAACAATAATTATGTTTGGTCATGTGACATTTTCTTGCAGTGATACAAGTTTGGTTGGTACTTTCTTTGAAATTCATCTTTGTTTCTAGTAAACACATTAACAAATAATGAATAAAAATAGATGTATTATTAAGTAGATCAAACAATTGCAATGATCAAATATAGCGTTATATAGTTGATTGAATAATTAAAAGTTGTGAACTTAGATGAATTTTACAATGCTTTGATCTCTATAAATTTGAGTCCGATCTGTATAATCATCTGTGATACAACGATGATATAGCTATTAAAATTTAAAACTTGCCTACATTCCCAATTTTGAATGCTTGATTGAATGCTCTAAGTTGTTACCCGTACGCTGACATTGTTACCTATACACCGACATTGGCCTACTATGAAGTTGTTACTTGTACATTGAAATTCTGCCTATTATGGTTTCTTAATCATCTAACATTTGCAAATAAACAATTTAGCTATGTTTTAGGTCTTAATTCTCTACCCTAAAACCTGTTGGTACAGAGAGTGGCCAAAGAGCAGCTATTCAGAAACCCAGGCTTCAGATAAACAACCTGATGCACTGTATTCTTCCATTAACACAGGCTTAAAATTCAACACCATAGGTGCGCACTCAGTCATGCAACGCTACACTGAGTTACCGAATTTGAACTATAACGACACAAACAACGTTTGGAACCCATTCATTCATTCCACTGGCTCTGCTGACTGCGATAAACCAGCACAAACTTATTTTGATGCCTGGTCTACTGAGAACAATAGTGCTAATCTTCCATTGCCAACCCTAAGCTTATCGATCCCTACTGCAATTGGGGAAGACTCCACTAAGGATATGAAATCACATCAATTGTATAACTGGATGGGGCTTGATTCTACTGTTGGGGGGCCGTTGGCTGAAGTGCTTCATTCTAGTAATTTGACTTCTCATGAGTCAAGTCCCAGAGAGAGTTTTGTTTCTTCGCCTTCTGACGTTTTGCAGAAGGCCATTGCTACTCTCTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020262445.1	7.9e-38	uncharacterized protein LOC109838406
Swissprot	Q8L8A8.1	4.8e-24	Transcription activator GRF2
trEMBL	A0A5P1EZX7	7.7e-35	Growth-regulating factor

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT4G37740.1	49.60	4e-28	122	AtGRF2;GRF2	growth-regulating factor 2

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G01660	AT4G37740.1	125	45	2	126	233	160	283	49.60	4e-28	122
AfisC6G01660	AT5G53660.1	118	54	2	121	232	45	162	49.15	3e-26	116
AfisC6G01660	AT2G22840.1	115	37	4	132	229	134	247	52.17	4e-26	116

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF08880.8	QLQ	Domain	131	163	39.2	3.7e-10
PF08879.7	WRC	Domain	178	220	62.1	2.7e-17

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005739	C	mitochondrion
GO:0005829	C	cytosol
GO:0005524	F	ATP binding
GO:0005618	C	cell wall
GO:0005635	C	nuclear envelope
GO:0005774	C	vacuolar membrane
GO:0005794	C	Golgi apparatus
GO:0006995	P	cellular response to nitrogen starvation
GO:0008285	P	negative regulation of cell proliferation
GO:0009506	C	plasmodesma
GO:0009570	C	chloroplast stroma
GO:0009624	P	response to nematode
GO:0009631	P	cold acclimation
GO:0009739	P	response to gibberellin
GO:0009742	P	brassinosteroid mediated signaling pathway
GO:0010114	P	response to red light
GO:0010218	P	response to far red light
GO:0044212	F	transcription regulatory region DNA binding
GO:0016036	P	cellular response to phosphate starvation
GO:0050826	P	response to freezing
GO:0019222	P	regulation of metabolic process
GO:0019760	P	glucosinolate metabolic process
GO:0046686	P	response to cadmium ion
GO:0030912	P	response to deep water
GO:0043565	F	sequence-specific DNA binding
GO:0045309	F	protein phosphorylated amino acid binding
GO:0048046	C	apoplast
GO:0048364	P	root development
GO:0048366	P	leaf development
GO:0051365	P	cellular response to potassium ion starvation
GO:0061062	P	regulation of nematode larval development
GO:0080167	P	response to karrikin

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network