result

Gene information

Detail information of AfisC6G01695

Location

Gene	Chr	Start	End	Strand
AfisC6G01695	chr6	278540626	278542040	-

Sequences

CDS

Protein

Gene

>AfisC6G01695
GCTTCTCTTCCTCTCTTATCATTACTACTTTATTTTTTCCATCTCTATTATGCTATATTACAGGTTTATAGCCTGCATACTTCTTTGCCCTTGCTTCATGGCTCATTAATCTCTGTCCTTCACTGTCTCTGCTTGCTTCCATCATCCAGCTCTTCCCAGGTCCCACTCTTTCTCTCTCATCCTTTATTTCTAACACTCTTCCAGTGTCTTGCAAATAAAATCCCATTTCTGTTCATGTTTTTTTTAACAGGCATTATGCTGAAGCTGTGAAAGCAAAAGCAAGTTAGTCAATCTGGATTCATGGAAGAATCAGTAAACCAGAATCAAGAAATCCAGAACTTCCTGTTAAACCACATTCATCAGTTACAGCAACAGCCTTCTGCATCAAAAAAACCTTCTAAAATCACTGGGAAAATCGTACCTGTACATGGAGGGCACATAGTTCGCGCTACTGGTCGTAAAGACAGGCACAGTAAAGTCTGCACTGCTAAAGGCTTGAGAGATAGAAGAGTTCGGTTATCTGCTCACACTGCTATACAGTTTTACGATGTTCAGGATCGATTAGGCTACGATCGACCCAGCAAAGCAGTTGATTGGCTGATGAAGAACGCTAAAGCAGCTATCGATCAATTAGATCAACTGCCTCCTTGGAATCCCAACACCTCTTTAGATTTTCAAGAAAATTTGCATGCAAACCACGAAACTGCAAATGCAAATGCTTCTTTCCCTAGTAGCAGTCACGTTCAAGATTTACGGCTATCTCTTCTGAACCCATGGAACGTGTCGGATAACAACATGTTTAGTCAACAGTCGGTTGTTGGAAATAGTGAATTTTTCACTCAAAGGGAACCCCTTCAGTCCAGTAATAGCTCTTCATTGTTTGGTTATCCGATGCAGCATTCACTATTTCATAATAATTTTAACTATCCTTCACAGTCTGTTCAAGATGTTGGGTTTGGTTTCTCAGGCTTTCAGGTGCCTGTAAGAATTCAAGGTCAAGAGGAGGAGCATGATAACAGCATAGTAGATAAGCATGATTCTGGTTCTACTTCTCAGTATTGATTAATCGGGTATTTTGCTTATTTTTTGATGTGTTTTGCATGTAGTACTTGTTACTCTTCTTGTGCTGATTGTAACTTGTTCCACTTCTGTTGCATGAATTGATTTAAACTATATTTGAAAGAATTTGATATGCATATGATTGGGAATAGAGTGAAATGATATTAAAATCTGCAGTAGATGCTGGAAGAATCGAAGGAATGTGTGTTCTTTACTGTGTGGAGGATTATTTTATTTTGTATTTGAAGAATAAAATATTTGTTGTGGTGTAGGATACATTTCAAATGAACAGTGGATGCTTCTGTTTGCAAAACAGTCGATTAAAGTAGTGAAAATGATGCATATTTCAAATGAAC

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020252797.1	3.9e-61	transcription factor PCF5-like, partial
Swissprot	Q8LPR5.1	9.4e-36	Protein MATERNAL EFFECT EMBRYO ARREST 35
trEMBL	A0A5P1FM80	2.8e-61	TCP domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G15030.1	79.55	3e-39	159	MEE35;TCP4	TCP family transcription factor 4

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G01695	AT3G15030.3	88	18	36	123	28	115	79.55	3e-39	159
AfisC6G01695	AT3G15030.2	88	18	36	123	28	115	79.55	3e-39	159
AfisC6G01695	AT3G15030.1	88	18	36	123	28	115	79.55	3e-39	159

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF03634.10	TCP	Family	51	163	113.3	1.4e-32

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005739	C	mitochondrion
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0008285	P	negative regulation of cell proliferation
GO:0009507	C	chloroplast
GO:0009637	P	response to blue light
GO:0009733	P	response to auxin
GO:0009793	P	embryo development ending in seed dormancy
GO:0009908	P	flower development
GO:0009965	P	leaf morphogenesis
GO:0030154	P	cell differentiation
GO:0031347	P	regulation of defense response
GO:0045962	P	positive regulation of development, heterochronic
GO:1903508	P	positive regulation of nucleic acid-templated transcription
GO:2000032	P	regulation of secondary shoot formation
GO:2000306	P	positive regulation of photomorphogenesis

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network