result

Gene information

Detail information of AfisC6G01746

Location

Gene	Chr	Start	End	Strand
AfisC6G01746	chr6	286503534	286505709	-

Sequences

CDS

>AfisC6G01746
ATGTCCCAGCTATTTTTGAGGAGCAGAAGCCTGAAACGTGTATTCCAATGGAAATCAAGAGGAGAAGAAGATTTTAAAGAGCCAGCATCCTCTATTCTTCTTCAAAAACCAAGTTGGAAATGCTTCTCTTATGAAGAAATATATCAAGCAACCAATGGCTTTCATAAAGATAATTTGGTTGGAATAGGAGGACATGCTGAGGTTTATAGAGGAGTTTTAAAAGGTGGACAAACAATTGCAGTTAAAAGACTTACAGACGCGTTAAGTGATGAGAAAAAGGAAAAAGAGTTCTTGACAGAGCTTGGAACTGTTAGCCATGTCAAACATCAAAACGTCTGTTCTCTTATTGGCTGCTGCATCGATAACGGTCTTCATTTGGTGTTCGCCCTATCTTGCCTTGGCTCTGTCTCATACAATCTTCATGATAAACATTCATCGCCTATGCCTTGGGAAGTCCGGTATAAAATTGCAGTAGGAACTGCTCGAGGACTGCATTATCTTCATAAAGAATGTCAGAGGAGAATCATACATAGAGATATAAAGGCGTCAAATATACTACTAGCGGCTAGTTTTGAGCCTCAAATATCCGATTTTGGTCTAGCTAGATGGCTCCCATCAGAGTGGACTCATAGGGCAGTTTCTCCTATTGAAGGATCATTTGGGTGTTTGGCACCAGAGTATTTCACGCATGGATTAGTTGACGAGAAGACCGATGTATTTGCATTCGGAATCTTTCTACTGGAACTCGTTTCAGGGAAGAAACCAGTTGACGGGTCTCATAAGAGCTTGCTTAGTTGGGCAAAGCCTCATTTGGATGACGGCAATGTACACATGCTTGTGGATTCAAAGTTAGGAGAAGATTATGATGTTAGCCAGCAGAAGAGGATAGCATTTGTAGCCTCGCTTTGTATAAGAGAAATTGCCATATGGCGGCCTTCCATGACAGAGGTACTAAATTTAATGGAAGATGGTGAGATATTGTTTGAAAACTGGAAAATGCCAGCAGAAGAAGCAGAAATTTGGGGTTTTGAAGATCTTGATGAATATGATAGTGATATATTTGATGGCTGTGATACCCCTTCCACATCATCTTCTTTATCAATATGA

Protein

Gene

>AfisC6G01746
ATTTGTTTTAATACTCTAGCTGATCCATCTATTTTCTCCTTCTCTTTCATCCATTTCATTAAATAAACTGCATCCTGTAGCATATAATTAGATTACAAGTTGTAAACATAAATATATATACCTTGTCCATAGGATTCCATTTACAAAGCATTTGCCTCATAATGTCCCAGCTATTTTTGAGGAGCAGAAGCCTGAAACGTGTATTCCAATGGAAATCAAGAGGAGAAGAAGATTTTAAAGAGCCAGCATCCTCTATTCTTCTTCAAAAACCAAGTTGGAAATGCTTCTCTTATGAAGAAATATATCAAGCAACCAATGGCTTTCATAAAGGTACACACTATAAATAGTCCTAAACGTCAACTGAAACCCCATTAATGAAAAATACGAAACTCGTCGTTCTTTTTGTGTAGATAATTTGGTTGGAATAGGAGGACATGCTGAGGTTTATAGAGGAGTTTTAAAAGGTGGACAAACAATTGCAGTTAAAAGACTTACAGACGCGTTAAGTGATGAGAAAAAGGAAAAAGAGTTCTTGACAGAGCTTGGAACTGTTAGCCATGTCAAACATCAAAACGTCTGTTCTCTTATTGGCTGCTGCATCGATAACGGTCTTCATTTGGTGTTCGCCCTATCTTGCCTTGGCTCTGTCTCATACAATCTTCATGGTAATTTAATTAGTAATTAGAGAAATATGACAAGACAATGTTATCATCTACAACAGTCACATATGATTGTGCAAAATGCATTAATTGTAGATAAACATTCATCGCCTATGCCTTGGGAAGTCCGGTATAAAATTGCAGTAGGAACTGCTCGAGGACTGCATTATCTTCATAAAGAATGTCAGAGGAGAATCATACATAGAGATATAAAGGCGTCAAATATACTACTAGCGGCTAGTTTTGAGCCTCAAATATCCGATTTTGGTCTAGCTAGATGGCTCCCATCAGAGTGGACTCATAGGGCAGTTTCTCCTATTGAAGGATCATTTGGGTAAGTTATAAGTTATATGCATATTAGTTGCTCATTAGAGATGAAAGGTAATAAATACTAATTGAATGAATGTATTCTTAGGTGTTTGGCACCAGAGTATTTCACGCATGGATTAGTTGACGAGAAGACCGATGTATTTGCATTCGGAATCTTTCTACTGGAACTCGTTTCAGGGAAGAAACCAGTTGACGGGTCTCATAAGAGCTTGCTTAGTTGGGTGAGTGTTCTTTACTAAAAGTAGTGATATTTTGAACTCTGTGTGTAGTGTACCCGGTAATATAATCAGTTATTAACTATATCAGGCAAAGCCTCATTTGGATGACGGCAATGTACACATGCTTGTGGATTCAAAGTTAGGAGAAGATTATGATGTTAGCCAGCAGAAGAGGATAGCATTTGTAGCCTCGCTTTGTATAAGAGAAATTGCCATATGGCGGCCTTCCATGACAGAGGTAATCATCATCTTTATACCTTCTGTCTAGACAGATTTTGAATGGTCATGTAAGTTAAAATGGAATATGTTGAAACCAATTGCAAGTTCTAAACCAAGACAAAATTAGTGGGACTGCGCTCGTGAAAGACTAGTCTTAAACGTGATCTAACAAACTATGATCAATTATATTTTACCAAACATATAAGTTATAACAAACAAAATACAATGGGCGCAATATATTCTCTACATGACATGGTAATCCAATTAGCTATATATCTTATAACAATTATAGCTTGGAGAATAGTTTATGCATATTTAGGACACCTTAACACAAGAATCTTGTCATAATTTAATAGTACCCAGATGCTCTTACTTTCTAATGATAATTTAGTTTTATTACGGCAGGTACTAAATTTAATGGAAGATGGTGAGATATTGTTTGAAAACTGGAAAATGCCAGCAGAAGAAGCAGAAATTTGGGGTTTTGAAGATCTTGATGAATATGATAGTGATATATTTGATGGCTGTGATACCCCTTCCACATCATCTTCTTTATCAATATGAAATCCTTATACAAATTGAATGCAATTTTCTGAATAAGTGTTAGCGAATTATGTAGTATTAGTGAGCCTAGAATCTTATACCTTTGCCTGAGGGTAATGTATATATATAAGTTAATTATCTTAGCAAAGCGGTAATTTGGCTAATAGGTTAATTGTACATACATATACATATATGTACATACATATA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020264675.1	3.5e-143	probable receptor-like serine/threonine-protein kinase At5g57670
Swissprot	Q5XF57.1	1.8e-99	Probable receptor-like serine/threonine-protein kinase At5g57670
trEMBL	A0A8T3BFF7	1.9e-143	Protein kinase domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G18890.1	56.91	3e-119	425		Protein kinase superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G01746	AT2G18890.1	369	138	5	5	352	3	371	56.91	3e-119	425
AfisC6G01746	AT5G57670.2	349	163	3	18	364	236	578	51.00	4e-101	365
AfisC6G01746	AT2G18890.2	267	85	4	5	253	3	269	61.42	4e-94	341

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF07714.14	Pkinase_Tyr	Domain	57	262	128.3	2.7e-37

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0005829	C	cytosol
GO:0004675	F	transmembrane receptor protein serine/threonine kinase activity
GO:0005634	C	nucleus
GO:0007166	P	cell surface receptor signaling pathway
GO:0019722	P	calcium-mediated signaling
GO:0009623	P	response to parasitic fungus
GO:0009738	P	abscisic acid-activated signaling pathway
GO:0009814	P	defense response, incompatible interaction
GO:0009845	P	seed germination
GO:0012505	C	endomembrane system
GO:0019901	F	protein kinase binding
GO:0046777	P	protein autophosphorylation
GO:0048364	P	root development
GO:0051020	F	GTPase binding
GO:0071369	P	cellular response to ethylene stimulus

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network