result

Gene information

Detail information of AfisC6G01750

Location

Gene	Chr	Start	End	Strand
AfisC6G01750	chr6	287030722	287033918	-

Sequences

CDS

>AfisC6G01750
ATGGACATGGATACTGGTTCCCATAACTGGCTTTCCTTCTCCCTTTCCAACCCTTCTTCTTACTTCCTTCAACATGCGGCGGACGACGGCATGGGGCCAAAGTTGGAAGACTTCTTAGGAGCTGGCGGCGGCGGCGACCAGCCGATTAAGTTCACCAGCGGAGAAGCGGACACAAACAATAATAATGAGATCTATGTGGACAGTAATGATGAGTTGAGAAGTATCGCTGCTGCTGGCTTCTTGCATGCAGGTACTTCTTCTTTACCTGCTGACCACGACGCTGACGTCAGCAAGATGGTCGTGCCGGAGGCCAAAAAGCCTGTCGATACTTTTGTCTTATTTACAAGTTTTGAATTTAATACAATAGGTGGATATGATAAAGAAGACAAGGCAGCTAGGGCATACGATTTAGCTGCTCTAAAATACTGGGGTCCGACCACAACTACCAATTTTCCTGTATCCAATTACGAAAAGGAGCTGGAAGAGATGAAAAACATGACTCGTCAAGAGTTCGTCGCATCCCTTAGAAGAAAGAGCAGTGGATTCTCTAGAGGAGCTTCTATTTACAGAGGGGTTACCAGACATCATCAACATGGTCGATGGCAAGCAAGAATCGGTAGAGTAGCGGGCAATAAAGATCTCTATCTTGGAACATTCAGCACACAAGAAGAAGCCGCAGAAGCCTATGATATAGCAGCAATAAAATTCCGAGGCCTAAACGCAGTGACCAATTTCGACATGAGCCGCTATGACGTGAAAAGCATTGCAAACAGCAGTCTTCCAATAGGTGGTATGGCAGGCCGGGCTTCAAAGCCCGATAACTCATGCTCCTCTTCGGATAACAACGCCTTAAACATGGTGGATGCAAACCATCAAAACGACTATCAAGACTCGTCATCGAATATCAGTTTCTCCATGCTCCCCATCAACAAACAAGAACAATACCATCAAGATTATTATTCTTTGCTAGCTTATCAACAACAGCAGCAACAGTATGGAATGTTAGCTTCAGGTGTGAATATGGATTTTGCTAACAATGAACTGGTCTGGAGTAATGGGGTTCTGCAGCATTCACAGTCGGTTTTGAACAGCAATGGCAGTATTCCTTATGCTACTCCAATCAGTGCAGGATATGATCAGCAAGGTCAAAGTTATTATATGAGTAACTTGGTAAATAATGGAGGATCATCAGCTGCTTACTATCATGAAGCAGCAAAGTCTAGTAGTAATAGTAGTAATGTTGCATTGTTTCATAGTCCTTTGTTTGGAATGGAATGA

Protein

Gene

>AfisC6G01750
ATGGACATGGATACTGGTTCCCATAACTGGCTTTCCTTCTCCCTTTCCAACCCTTCTTCTTACTTCCTTCAACATGGTAACATTTCTCTAAACCTACTTCACTTAATTACATGTTTCTGTTTATTCCCAGAATACCTTTTTGATAACTAGTTTCATAAGCAGCGGCGGACGACGGCATGGGGCCAAAGTTGGAAGACTTCTTAGGAGCTGGCGGCGGCGGCGACCAGCCGATTAAGTTCACCAGCGGAGAAGCGGACACAAACAATAATAATGAGATCTATGTGGACAGTAATGATGAGTTGAGAAGTATCGCTGCTGCTGGCTTCTTGCATGCAGGTACTTCTTCTTTACCTGCTGACCACGACGCTGACGTCAGCAAGATGGTCGTGCCGGAGGCCAAAAAGCCTGTCGATACTTTTGGTCAGAGAACTTCTATTTACCGTGGAGTTACCAGGCATGTATACTATTGCTAAGTTATAAGTTATACGTTGATCATCTATCGCATGCAAAAGTGATAACGACTTTGTATTTACCATAATTTCTCCATTTAGAATTAAAATAAATAAAAATGATTACTTTTTTTGATTCACTGGTTGAAAACTGGGATGCAGGCATAGATGGACTGGAAGGTATGAAGCACATCTCTGGGACAATAGCTGTAGGCGTGAAGGGCAGAGCCGCAAAGGAAGACAGGGTATATTTTGCTACTACAGATGTATCTTTGCTACTTAAATTTTAAATTATATCCGATTTTTATACGACTAACAAGGGCTTTTTTGTTTGTTTTCTTGCTATGTTACGTGGCAATTATGGTTGATCATTCTACAGTTTATCTAGGTATTATGTTGTTCTAAGCATAACATGCTTCTTTGTTTTTTTTAATCGTTCAATTTTAGTCTTATTTACAAGTTTTGAATTTAATACAATAGGTGGATATGATAAAGAAGACAAGGCAGCTAGGGCATACGATTTAGCTGCTCTAAAATACTGGGGTCCGACCACAACTACCAATTTTCCTGTGCGTAGTTCTTCTTCCAATTAGATAAAGTTATGCATCGAGCGAAAATTGCATCGATTAATACAAATTAATTACATTTATTCACGTATTCAGGTATCCAATTACGAAAAGGAGCTGGAAGAGATGAAAAACATGACTCGTCAAGAGTTCGTCGCATCCCTTAGAAGGTGGGTACAGTTTCATGTTTAATTATAATTAATTGATTTTTTGTACTAGTGTGATGAATCATTTTAGTTGATCAATATGTTTATTTTGAATAGAAAGAGCAGTGGATTCTCTAGAGGAGCTTCTATTTACAGAGGGGTTACCAGGTATTTTATCACTGCTGTTTTGATAAAGATGAGAAAAGTTTACATTGACGATTAATTTGGCTTGTCTGTGTTATTAGACATCATCAACATGGTCGATGGCAAGCAAGAATCGGTAGAGTAGCGGGCAATAAAGATCTCTATCTTGGAACATTCAGTATGTTTTTTCTTTTTAACCTTTTTTGTTCAAATATCCATTTTTATCTACTTTAATAATAATGTCTTTCTTTTAAAAGTCAGTCGGAGCTCATATTCGTGTACTTTTTGTTCAAACCTGTACAAATGGAATCCAAGAACAAAGAATAATACCTCATTCAAATTTTAAAAGCTGCACCATTTACATTTTCATATAGAACAATTACCAGCATACATCACCATTTTATGGGGGTGTCGCATTACACGTAACACTGCAACTTAACTCAAGTTAATATGTTTATACGTATTCTTCTTTGCGTTATTGTTTCTTCATCTCCAAGTATTTTAATAAGATGCTAATAAACGCATTACTTAATTAGGAGCGTATATATGTACGTTTCTTTTACATAAAACAATGACTAAGCCAATGACCACTTTTACAATAGTAAGATTAGATTGTCGATCTAGTAGTAAACTGTTCTTGTGTGACAAATATCCTTTTTCTTACTACTTGGCAATAATATGTAACAATAATTGTTGGCCCACGAAATATGAGATTGATTGGTTTATTGGTTTATTCTATGTTGTGAATACAGTATAATTAAGTTACGTTTAGCAGTAGTGAACTCTTATCATCCAATAGCAAGAAATTCGATTATATTACCCACTTATTACCCCAACATGACTATTGACCCTAAAAAAAATGAATTAAAAAAAAACGATTAAGGATGTTTGAAAGAGTAAATAATATATGGAGCTTTGAACAAAGTAGGTACCCACAATAAAGAATACTGATCATCAAGGATCTAGTAGCCACTAAAAATGTGGTGTTCACAGTTTTGATCGGTATATTCATGCTGGATTTGGTGTCCCAGTTCTCTCCCTTTTTTCCAAGAAAAACGATGTCCCTCTAGTGTGAAATATTTAACATTATGCTTTTATAGGCACACAAGAAGAAGCCGCAGAAGCCTATGATATAGCAGCAATAAAATTCCGAGGCCTAAACGCAGTGACCAATTTCGACATGAGCCGCTATGACGTGAAAAGCATTGCAAACAGCAGTCTTCCAATAGGTGGTATGGCAGGCCGGGCTTCAAAGCCCGATAACTCATGCTCCTCTTCGGATAACAACGCCTTAAACATGGTGGATGCAAACCATCAAAACGACTATCAAGACTCGTCATCGAATATCAGTTTCTCCATGCTCCCCATCAACAAACAAGAACAATACCATCAAGATTATTATTCTTTGCTAGCTTATCAACAACAGCAGCAACAGTATGGAATGTTAGCTTCAGGTGTGAATATGGATTTTGCTAACAATGAACTGGTCTGGAGTAATGGGGTTCTGCAGCATTCACAGTCGGTTTTGAACAGCAATGGCAGTATTCCTTATGCTACTCCAATCAGTGCAGGATATGATCAGCAAGGTCAAAGTTATTATATGAGTAACTTGGTAAATAATGGAGGATCATCAGCTGCTTACTATCATGAAGCAGCAAAGTCTAGTAGTAATAGTAGTAATGTTGCATTGTTTCATAGTCCTTTGTTTGGAATGGAATGATGTGAAATGACAAAAGAAAAGAAAAGAAAAATATGATGGTAGATTTAGAAAACGTGGAAGTGACGAAGACTGACAGACTAACTAGTTTTTATCCAAAGTTTTGCTCATGCTTGTGTTTTATCATCTTTTGCTTTTTTTCTTTTTATGATTCATTTCTGTTGCATGATTCTAC

Functional annotation

Database	accession number	e-value	annotation
nr	NP_001290493.1	4.2e-100	AP2-like ethylene-responsive transcription factor AIL5
Swissprot	Q6PQQ3.2	9.5e-73	Protein AINTEGUMENTA-LIKE 5
trEMBL	A0A8K0MUB0	1.1e-102	AP2-like ethylene-responsive transcription factor AIL5

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G57390.1	42.29	8e-79	291	AIL5;CHO1;EMK;PLT5	AINTEGUMENTA-like 5

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G01750	AT5G57390.1	480	170	19	32	425	100	558	42.29	8e-79	291
AfisC6G01750	AT1G51190.1	159	27	1	122	279	226	384	82.39	2e-75	280
AfisC6G01750	AT1G51190.1	87	44	1	173	251	175	261	40.23	8e-12	68.6

Ortholog group

Species	Genes
Allium cepa	g199946.t1
Allium fistulosum	AfisC6G01750
Allium sativum	Asa8G04796.1
Arabidopsis thaliana	AT1G72570.1
Oryza sativa	LOC_Os04g55970.1; LOC_Os04g55970.2; LOC_Os11g19060.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00847.17	AP2	Domain	187	238	39.3	5.1e-10

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000723	P	telomere maintenance
GO:0000976	F	transcription regulatory region sequence-specific DNA binding
GO:0000981	F	RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0006110	P	regulation of glycolytic process
GO:0006355	P	regulation of transcription, DNA-templated
GO:0009414	P	response to water deprivation
GO:0009651	P	response to salt stress
GO:0009734	P	auxin-activated signaling pathway
GO:0009737	P	response to abscisic acid
GO:0009744	P	response to sucrose
GO:0009873	P	ethylene-activated signaling pathway
GO:0010022	P	meristem determinacy
GO:0010077	P	maintenance of inflorescence meristem identity
GO:0010092	P	specification of organ identity
GO:0010093	P	specification of floral organ identity
GO:0010187	P	negative regulation of seed germination
GO:0010449	P	root meristem growth
GO:0019432	P	triglyceride biosynthetic process
GO:0019953	P	sexual reproduction
GO:0030154	P	cell differentiation
GO:0040008	P	regulation of growth
GO:0045723	P	positive regulation of fatty acid biosynthetic process
GO:0048316	P	seed development
GO:0048481	P	plant ovule development
GO:0048506	P	regulation of timing of meristematic phase transition
GO:1901959	P	positive regulation of cutin biosynthetic process
GO:1904278	P	positive regulation of wax biosynthetic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09285	OVM, ANT; AP2-like factor, ANT lineage	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network