result

Gene information

Detail information of AfisC6G02129

Location

Gene	Chr	Start	End	Strand
AfisC6G02129	chr6	351887534	351888972	-

Sequences

CDS

Protein

Gene

>AfisC6G02129
AAAGACTTGCCATCCAGAACCTAGTCCATCTTATACATATTAACCTCTCCCTTCTCCCTCATTTTCCCACTTCTCCTCTCTTTCTTCTTCCTTCATCTATTAAAATCAATAAGCTAGACAAGTTATATTTTATCAGAATCATGGATGACACTGAAACCACAGTTTCCGATGATCAAACTAAATCCTGCTCTAGAGGCCACTGGCGACCTGGCGAAGATGAAAAACTTCGACAACTTGTCCAAAAATATGGCGCTCAAAACTGGAATTCTATTTCTGAAAAACTCCAAGGAAGATCTGGTAAAAAATATATATGAAAAGTTAAAGTGTAGCAATAGTTGCAAGGCTAAAATGTCTCAGTTATCGTAATGATTTGTTATTTACCCTATATCTTTAACCAAATTACATATTTGAAGAAGTTCTCCATGTAAAATAAAAATAATTTTTTTTTACTTTTGGTATATGAACACAGACCATGTAGGCAGAAAGTTACATATATTTGTAAATAGTTATGAAACTTGTTTAATTTTGTGATTTTGTTTCTAAAAGTGGATCAAATGAGTGAAATTCCCTCATAGTAAATACTATTTATTTTATTTTACTTTTATGTTTATTTTTACTTCATTTATGTGCGATAATATGATAAAATAACTGAATTTGAATTACAGGAAAAAGCTGCAGACTGAGGTGGTTCAACCAACTAGACCCAAGAATAAACAGAAGGCCATTCACTGAAGAAGAAGAAGAGAGGCTTCTGACAGCTCATCGCCTACATGGCAACAAGTGGGCCCTCATAGCTCGACTCTTCCCTGGAAGAACCGATAATGCAGTCAAGAATCACTGGCATGTGATCATGGCTAGAAGGCAGAGAGAAAGAATGAGGTTATTCGGTAAAGGAAGCAATTCTTCTTCTTACAATAGTAATAACACCAGCACTCACTTTCAGTTTGAATTTAGAAAGGCTGGTAATTTGGGGATTTCGGGTTCGGGCCATTCGAATTGGGCATTTTCTTCTTCACTCGATAATTATAGAATAGTAGAGTCTCCACCATTCTCATATCCACATAAGTATTTTAACAGCCAGAAGAAAGATGGCCAGTTTTCTATCGGTTTTTCTTTTGTTGAAGATTCGAGTAAGCTAAATATATCACAAGATGACGATGAATCTTTGAAAAGGAAGGATGTTCCTTTCATTGATTTTTTGGGTGTTGGGATAAGTTCTTCTTGAGTTTCTTAGCTCATTAAGATATCTCATACTGTTGATAACTTACTGAGGAGTACTTGGTAATAAAATTATAGTAGTTTCATGTGTTAAATTTGTCAATGGTTTTAGTTGTCTATGTTTTGTTGTTCATTACGTAATCAATCTTCTTAGAAGATATATAGATAGTATGTTGATAATTGCATGCTTTCCATTTATATAATTGGTTCCTTTTTGTCAA

Functional annotation

Database	accession number	e-value	annotation
nr	ONK77422.1	5.9e-59	uncharacterized protein A4U43_C02F6360
Swissprot	Q6R0C4.1	1.6e-48	Protein ABA-HYPERSENSITIVE 1
trEMBL	A0A5P1FH41	4.2e-59	Transcription factor MYB52-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G17950.1	45.06	3e-53	204	ATMYB52;BW52;MYB52	myb domain protein 52

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G02129	AT1G17950.1	253	99	6	16	238	3	245	45.06	3e-53	204
AfisC6G02129	AT1G69560.1	230	102	6	15	234	104	328	49.13	4e-53	204
AfisC6G02129	AT4G33450.1	246	108	5	10	237	11	250	46.34	2e-51	199

Ortholog group

Species	Genes
Allium cepa	g100323.t1
Allium fistulosum	AfisC6G02129
Allium sativum	Asa8G04544.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF13921.3	Myb_DNA-bind_6	Domain	21	81	61.6	5.7e-17

Gene Ontology

Accession	Ontology	Name
GO:0000122	P	negative regulation of transcription from RNA polymerase II promoter
GO:0000978	F	RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001046	F	core promoter sequence-specific DNA binding
GO:0001077	F	transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0001135	F	transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0001935	P	endothelial cell proliferation
GO:0042742	P	defense response to bacterium
GO:0050832	P	defense response to fungus
GO:0005829	C	cytosol
GO:0006338	P	chromatin remodeling
GO:0009414	P	response to water deprivation
GO:0009555	P	pollen development
GO:0009651	P	response to salt stress
GO:0009723	P	response to ethylene
GO:0009733	P	response to auxin
GO:0009737	P	response to abscisic acid
GO:0009739	P	response to gibberellin
GO:0010199	P	organ boundary specification between lateral organs and the meristem
GO:0010200	P	response to chitin
GO:0016363	C	nuclear matrix
GO:0019760	P	glucosinolate metabolic process
GO:0046686	P	response to cadmium ion
GO:0042803	F	protein homodimerization activity
GO:0045624	P	positive regulation of T-helper cell differentiation
GO:0045944	P	positive regulation of transcription from RNA polymerase II promoter
GO:0048527	P	lateral root development
GO:0048579	P	negative regulation of long-day photoperiodism, flowering
GO:0051571	P	positive regulation of histone H3-K4 methylation
GO:0051574	P	positive regulation of histone H3-K9 methylation
GO:0051782	P	negative regulation of cell division
GO:0071367	P	cellular response to brassinosteroid stimulus
GO:0080060	P	integument development
GO:0080113	P	regulation of seed growth
GO:1901347	P	negative regulation of secondary cell wall biogenesis
GO:1901348	P	positive regulation of secondary cell wall biogenesis
GO:1902074	P	response to salt
GO:1904961	P	quiescent center organization
GO:2000022	P	regulation of jasmonic acid mediated signaling pathway
GO:2000031	P	regulation of salicylic acid mediated signaling pathway

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09422	MYBP; transcription factor MYB, plant	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network