result

Gene information

Detail information of AfisC6G02157

Location

Gene	Chr	Start	End	Strand
AfisC6G02157	chr6	358907216	358908447	+

Sequences

CDS

Protein

Gene

>AfisC6G02157
TATACAACTTGCAAACAACAAAATCAAAAGTATCATCTCTCGTTTACTTTTTTTCTCCTGTACTCACATTTCTCCCAACTCTGCATTAATACAACACACCATATCTCTCTTCTCATACAATACTTCACAGATAACAACCATAAACCATCAAATAAAGGATGAAGGTACAGTGCGACGTATGCGAGAAAGAGGAGGCAATGCTGCTGTGCTGCGCCGATGAGGCCGCTCTCTGCTGGAACTGCGACAAAGCTGTGCATTCCGCTAACAAGCTTGCCCAGAAACACCAAAGGCTTCCTCTCTTTTTTGCACCCACTACTTCACCTTCTTCTTCCAATTCTCTTTCAGCACCTAATACCTCCTCTAATCATGCTATGCCTACTTGTGATGTTTGCCAGGTACATATCTCCCTATATATGTACATTATATTCGTGTTTATCTACTTGATGATATGAGTTCAGACAGTGTGTTTATGCTGTCTATGCTAAGCATTTCAATATTCATTCAAGAAGTTTTAGCTGCTGAAAAGTATAGTTCATCTGCGGTCCTAAAGGACTTGGATAGTTGGATCTGTAAGTATTAATGGCTGCCAAACATTAGGCGTGCTATATAATGTATACATACGATATACGAAGTCAGTTAAAATACATTAATGCCTTATTTATGATGTGGGGGACTTGCCCAACCCTGACCTCATTATGCATACCATGTCCTTTTTTGTACGAAACATTTAATCAAAAGATTCAGAACTGAAATTTTTAATTTCAACATAAGCTTACATTTGGTAAAATTTATGTGCAGGAAAAAGCTGGATATTTCTTCTGTGTACAAGATCGAATGCTTCTATGTAGAAACTGTGATGTTAGCGTACACCAAATGAATCGATTCCAAACATCGCATAAAAGATTTATCATAACTGGAGTTAGAGTTGGGCTACAGCACTATGTTAGTACTGAGACTAATAATAGTTCAACTACTAATGAAGGAGAAGTAATTAGCGAAGAATGGATGTGGAATGAAGTGTTTAATTGTGCTGAGTATAGCCAGTGTTATGGACATTCTGAACCTGGTTCTTCTAGTTAGTTTTTTAATTTTCACTGCATATGTATTCTGAAACCAGTTTATATTTGAGAGAACTAGGAAAAATGACAAACTTTGAAAAAAAATTAGATTGAAGTACTTGAAGTTTTATTTTTAGACTGAAGGACAAATGCTAGTTATATTTAGCATTATAT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020107577.1	2.1e-42	B-box zinc finger protein 22-like
Swissprot	Q9SYM2.2	1.7e-36	Protein SALT TOLERANCE HOMOLOG 3
trEMBL	A0A6P5GI06	1.5e-42	B-box zinc finger protein 22-like

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G78600.1	47.92	2e-39	158	BBX22;DBB3;LZF1;STH3	light-regulated zinc finger protein 1

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G02157	AT1G78600.1	144	57	1	1	144	1	126	47.92	2e-39	158
AfisC6G02157	AT1G78600.2	144	57	1	1	144	1	126	47.92	2e-39	157
AfisC6G02157	AT1G06040.1	124	40	2	1	124	1	106	53.23	3e-32	134

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00643.21	zf-B_box	Domain	4	47	25.0	1.4e-05
PF00643.21	zf-B_box	Domain	72	113	31.3	1.6e-07

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0003712	F	transcription cofactor activity
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0009651	P	response to salt stress
GO:0010200	P	response to chitin
GO:0043565	F	sequence-specific DNA binding
GO:0048573	P	photoperiodism, flowering
GO:0080167	P	response to karrikin
GO:0090351	P	seedling development
GO:1900458	P	negative regulation of brassinosteroid mediated signaling pathway
GO:1902448	P	positive regulation of shade avoidance
GO:2000306	P	positive regulation of photomorphogenesis

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network