result

Gene information

Detail information of AfisC6G02407

Location

Gene	Chr	Start	End	Strand
AfisC6G02407	chr6	411052177	411053991	-

Sequences

CDS

Protein

Gene

>AfisC6G02407
TAACCCTATGACTGATGTACAAAAGAGAAACTGCGAGGCAAATCAAACTGAAAAGGTTTAGAGCAACAGAATCAGGTTTCTACTTTTTCCCTTTCTAATTTTTTTTTTACGTTTAATACTCATCAATCATATGTATACACATTAATTTGTATGACCTTTTAATAATATGTAAGATATACGTAGTATAAATTCATTGCAGCAAATGTGTGTTATTTGCATGTCATACATGTTTTAATTTGATAAGTTTCAATAACTTAATTTTTGTAATTTTAATGTATCTATAATGAGCTAGCTAGAGAGTTATTTTATTTTTTATTGCATCTATGCTTTGGGTAAAGATTTAAAGATTTATGACGTACGCACTAACTATTTTAGCGAACATACTGAACATATTAATTGTATTTCATTTGATTTAACAATGAGAGAGAATTTTGAATGGCTATTACCAGGAAAATAAATATGGACATAACTGATGTTGAATCGTTTTTGAACAATTCGGTAAGTTTGATTTCTTCAACGTTGATCAAACACAACAAAAAATTCGAAGTAAATGATCAATTAACAGTTACAGGAGAGGGAAAGCATGAACTACACAAACAGTCAATGGGAAGCTGCTTCAAACAGTTTAGATATCTATTTAACCGGAGATAATGATTGGGATCAGTACATTCAAGAACCTCCTTCTTCAGATAATTCCTGTTTAGAATCACCCGAGAGTCCACCCGATAATATTAACAATATTGAAAAAGGAAAATTTGTAGAATTCCCTGGAAGAAGTAACGGAAACATTCCAAGAATTCTTTCATTTGGTGATCCAAGCTCTCAAGTCGACCTGCATGCAACGCCCGCAGTTAAAAGAATAACGAACAGGTCGAGAACAACGAGGAGTAGGGCTGATTCGGCTAATCGTGAACATGTAATTGCAGAGAGGAAAAGGAGGGAGAAAATAACTGAAAATTTGATCGCATTGTCGGCTATTGTCCCAGGTTTGAAGAAGGTATGTACAGTATCTTTATTCATTAATTTACACTGTCAACCTTACCGAACATTTTGATAATGCAGAGAGACAAGGCATCAGTGCTCGCGAAAACAATCGAATACATGAAACAAATGCAAGAAAAAGTGAGGATGCTTGAAGAGCAAGTAGCAGCCAGTGTCAGGAATGTTGAGGCTGATGAGCTTACGAACGAACAGTCTAAGCTTGTTTCAGCTTCGAGCGTTGATGACCGAAATCTAAATGTTGATATTAAAGTTTCCGGGAAGGCATATTTAATCAAACTACATTGCTTTCAAGCCAGCAAAGGTACATTGGTGAAAGTTCTTAATCTTATTGAAAGTCTTCATCTGAATGTGGTCACTGCAAACTCAGTGCAATTTTCAGAACAGATTTTAGATTTGACGATTACTTCTCAGGTATTTTATATTTATTTTTATGTTTATGTTCACTTTTAATTGTTTTTTTACTGATTCACTGAAATCGAGGTAAAAGCAGGGTTCTTCAGTGTAGAAAAATCATAGTTCTTTGACTAATATGTTTTGTTTTAACTGTATAAAGGTGGAAGAAGGATTCGAGGTGGAGATCAAAGATCTTTTCACGACTCTAAAGATGGAATTAAAGAATGAATAACGTGAAGAAGGAATCGCATGGAAACTTGAAGAAGTTGTCGGTAGATCTACTCTGGAAAATAAAATGTCTTTACAAATTTATTGTCTTTTCCTACCAGTAATTTTGCCTCTCTGTTTAGTGGTTAAAGTAATAGAATGGACCTGATGTCAATTTGATGTTGTACTATGTCTTTAACTTTATTCTTTCAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020250782.1	3.9e-36	transcription factor bHLH18-like isoform X3
Swissprot	Q1PF16.1	1.5e-19	bHLH transcription factor bHLH019
trEMBL	A0A1R3L5E7	2.8e-36	BHLH domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G22760.1	36.68	6e-25	111		basic helix-loop-helix (bHLH) DNA-binding superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G02407	AT2G22760.1	199	111	7	109	294	98	294	36.68	6e-25	111
AfisC6G02407	AT4G37850.1	199	102	7	114	296	133	326	38.19	7e-25	111
AfisC6G02407	AT2G22750.2	198	111	6	111	294	109	301	34.34	1e-21	100

Ortholog group

Species	Genes
Allium cepa	g393847.t1
Allium fistulosum	AfisC6G02407
Allium sativum	Asa0G03030.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00010.23	HLH	Domain	129	175	37.6	1.5e-09

Gene Ontology

Accession	Ontology	Name
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007029	P	endoplasmic reticulum organization
GO:0043565	F	sequence-specific DNA binding

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network