result

Gene information

Detail information of AfisC6G02414

Location

Gene	Chr	Start	End	Strand
AfisC6G02414	chr6	413082749	413084761	-

Sequences

CDS

Protein

Gene

>AfisC6G02414
ATGGTCAGGCCATCTGTAGCTGACATAAGGGAGCATTGTATATACAATTCATTAGTGGTATATTCCAATTGCAACAATTTTCGTATATCGATTCAGCTTGTTTGATGAATTTCACCTGTAGCTCTTTATTTGACCAGTGGTAGTTTGCATCTTTTTAACTTGGTTCTAAGTTCCACAATTCAGTTAAAATTGCAAAATTTTCTGTGTTAATACTAAATTAAGCTGGTTTTTGCTGACATCATTGTTGGCATCTCCAACTAGAATCTAGGTATAAGCATTATAATTCAATTAAAACTCTTCATGTATTGTATTATTACAGATTTAGGCCTGTCAACGGATGCCTTCGGATGCGGATAATGCCATATCCACATCCGCATCCGAAATCATTTTCGGATATCGGACATCCGCATCCGCGGATACAGACGGATATCAGATAATTATCCTATCGTTAACGACCGATAAATCAAGAATTACAAAAAGAAAATTTTAGTTTAACATAAATATTTTTCAATCTCATTGATTATAGAAGTGTTAAAAATTAACAAATATAATGATAATAAATAGTGTCGAGCGGTTAAATAAGCATTAAGTGCATATAATATAAATTACTAACTTAATAAAATAATAAACGAATATCATTTACTGCATTAAAATACACATAATTTGAACTATAATCTTAACATAAACCGGACGGATAATTTTCGGATGCAGATGTCTTACTATCCGCATCCGCTTTTCCGGATATTGGATATTCCGCTTTTCGGATGTGGATGCGGACGGATTTTGGATTTTTCGGGTATTCATTGACAGCCCTATTACAGATTTCAACAAGCCCTCTAACTGAGTTACATAAAATGTGTTTAACACATTTGTGATGCTGCTGTGCAGATCTATAAGTAAAAATTGGTCTCCTGTTTATTATAACTACCATAACTATGAATGTAACTAATATATTTACTTCCCGGCCATATATATATTTTGTATATTAAATTCTACTTACTCAATTAAATAGTTGTTCTCTTGCTTATGCTTGTGTATATTTACAATTTACAGGGTGCTGGAACTTATATGTTCCGTATAAATAATGAGCATGTTGTTGATGCTACTAGAGCTGGGAGCATAGCCCATCTAATTAACCATTCTTGTGAAGTAAGGATCCACAATCTAATAATTATTCAGTTAGCTAAGCGTGAACATTATCAATCCTACCACATGATATTCTATTTGTGTTACTTCTGCATCTTGGCGTCCTGTTTTTACCTCCTACGAAAATCCCTAATTTTCCTTTTTATTTGAGGAATTAGTTGTTTGGTGAAACTATTTAAGTGTGTATGGTCACGATGACCATTTGTTCCCATGTAAAAGTCCATGTTGCCCGTATGTTCCCATCTAAAAGTTAATGTTGCCTGCTACATTTGAGTCGACTTCATTTGGATATGAAGCATAAAAACTTTAAATTTGGACATCAACTCAGAGTTTTGTTTGTATTGTTATATTAACACCGTCAACCCACTGATAAAAACACTAGGCATCGATTACTGTAATTCTTGAATTATTGTTCAAAATTTTTTTCTTGTCAGAATTGATTATTCTTATAAATTATGCTTCTCATGGAGTGTAATGATACGTTTACTTGTAGCATATAACTTGTGTTAACAATATATAGTTTCGATTATGTTGTCTTTGCTTTCAGCCTAACTGTTATTCAAGGACAATAACAATAAATGGTGAACCGCATATTATCATTTTTGCAAAACGAGATATAAAATTGTGGGAAGAGATAACTTATGACTACAGGTAAGCAATTTCCTTAATATTTTCTTTGTTACATTATTTGAAATAAGCCTACCAAACTTCTTTTTCATACCAAAAACTAGATTTTTCTCTGAGGATGAACGTCTTGCTTGCTTTTGTGGCTCCAAAGATTGTCGTGGAGTTGTCAATGATATGGACGACCAAAGAGCTAAAATTATTGTGAAACAGAGTGACTTAATTCCTTGTAATGGAGAATGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020678443.1	7.2e-51	histone-lysine N-methyltransferase TRX1
Swissprot	P0CB22.1	8.5e-49	Trithorax-homolog protein 2
trEMBL	A0A835RRZ1	1.8e-51	Histone-lysine N-methyltransferase ATX2

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G05830.1	76.58	3e-49	190	ATX2;SDG30	trithorax-like protein 2

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G02414	AT1G05830.2	111	26	0	1	111	952	1062	76.58	3e-49	190
AfisC6G02414	AT1G05830.1	111	26	0	1	111	952	1062	76.58	3e-49	190
AfisC6G02414	AT2G31650.1	132	39	1	1	130	931	1062	68.94	3e-48	186

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00856.25	SET	Family	24	85	52.8	5.2e-14

Gene Ontology

Accession	Ontology	Name
GO:0005737	C	cytoplasm
GO:0005700	C	polytene chromosome
GO:0005719	C	nuclear euchromatin
GO:0048096	P	chromatin-mediated maintenance of transcription
GO:0006461	P	protein complex assembly
GO:0008013	F	beta-catenin binding
GO:0008134	F	transcription factor binding
GO:0008270	F	zinc ion binding
GO:0044212	F	transcription regulatory region DNA binding
GO:0019827	P	stem cell population maintenance
GO:0031058	P	positive regulation of histone modification
GO:0032411	P	positive regulation of transporter activity
GO:0035065	P	regulation of histone acetylation
GO:0035162	P	embryonic hemopoiesis
GO:0035327	C	transcriptionally active chromatin
GO:0042800	F	histone methyltransferase activity (H3-K4 specific)
GO:0042803	F	protein homodimerization activity
GO:0043966	P	histone H3 acetylation
GO:0043984	P	histone H4-K16 acetylation
GO:0044648	P	histone H3-K4 dimethylation
GO:0045322	F	unmethylated CpG binding
GO:0045646	P	regulation of erythrocyte differentiation
GO:0045944	P	positive regulation of transcription from RNA polymerase II promoter
GO:0046427	P	positive regulation of JAK-STAT cascade
GO:0048188	C	Set1C/COMPASS complex
GO:0048511	P	rhythmic process
GO:0048523	P	negative regulation of cellular process
GO:0051569	P	regulation of histone H3-K4 methylation
GO:0070577	F	lysine-acetylated histone binding
GO:0071339	C	MLL1 complex
GO:0080182	P	histone H3-K4 trimethylation
GO:1902036	P	regulation of hematopoietic stem cell differentiation
GO:1990188	F	euchromatin binding
GO:1990837	F	sequence-specific double-stranded DNA binding
GO:2000179	P	positive regulation of neural precursor cell proliferation
GO:2000648	P	positive regulation of stem cell proliferation
GO:2001040	P	positive regulation of cellular response to drug

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network