result

Gene information

Detail information of AfisC6G02574

Location

Gene	Chr	Start	End	Strand
AfisC6G02574	chr6	447221652	447225937	+

Sequences

CDS

>AfisC6G02574
ATGGGCTGCATTTTCTCCAAAGGGATCACCAAAGAGGAGATTGTTGCAAAAGTTGCAAGCTTCAAGAAAGAATCAATCAAATCACTGAGTTTATCCACACATTCAAAGAAGGAGAATTCGGTATCATATGATTTGGAAGCCAACCACCAAAGAAATGGTAGTTCTAACAATATAGTTATTTTGGGAGATGATAAAAGAAGGAAGAATGGTCATCATAGAAGCGTTACCGTTGATGCAAGTTTGAACAAAGAAGATATTAGTTTGAGAAGTGGCAATGTACCCATTAAAGATGCTATTGTGGATGTGCCGAATGGGTTTTCTGGTGAACACGCAAACGCTGGTTGGCCTTCATGGTTGACTTCAGTTGCATCAGAGGCTATTAAAGGATGGTTGCCTCGAAGAGCTGATTCTTTCGAAAAATTAGATAAGATTGGACAAGGAACATATAGTAGCGTGTACAGAGCCCGTGATCTTGAAACTGGGAAAATCGTAGCACTTAAGAAAGTCAGATTCGTGAACATGGACCCAGAAAGTGTTCGATTCATGGCCAGAGAAATCGATATTCTACGCAGACTCGATCATCCAAATGTAATAAAACTAGAAGGAATAGTTACTTCAAGAATGTCATGCAGCCTTTATCTAGTATTTGAATACATGGAGCATGATCTTGCTGGACTTGTCATGACACCGGGTAACAAATTCACTGAACCTCAGGTGAAGTGTTATATGCAACAATTGCTGAGGGGTCTTGATCACTGTCACAGTCGTGGAATTCTGCATAGAGATATCAAAGGTTCTAATCTTCTGGTTGATAGTAATGGGATTCTTAGAATAGGAGATTTCGGGCTTGCTACTAGATTCGATCCTGAGAAGAAGCAAGCATTGACAAGCAGAGTTGTTACATTGTGGTACAGACCTCCTGAGCTTTTATTAGGGGCCACTGAATATGGCGTGGCTGTTGATTTATGGAGTGCTGGTTGTATTCTTGCTGAATTGCTTGCAGGAAAGCCTATCATGCCTGGAAGAACTGAAGTTGAGCAATTGCACAAGATATTCAAGCTATGTGGCTCACCAGCAGAAGACTATTGGAAAAGAACAAAAATATCACAATCAACCATTTTCAAACCTCAGAACCAATATCCTCGCCGCCTTTCGGAGACATTTAGAGATTTTCCTTCTTCTGCTTTGAAACTTCTTGATACGCTGCTTGCAATAGAACCAGATGAGAGAGGAACTGCTTCTTCTGCTCTTCGCAGTGAGTTTTTCACGACAAAGCCTCTTGCTTGCGATCCTTCAAGTTTGCCAAAATATCCACCAAGTAAGGAGTATGATGCTAAGCTTCGGGATGAAGAAGCTCGAAGACATAAAGAAGCAGCTATGAAAGGCCAGAGAGCTGGATCTGGAAAAAAAGGATCAAAAACTACACAAGAGAAAACTGCACAGGATACAAAAGATGCCCAGAAAAAGCCAAACAACAAAAGCTCGAGCGAGAAATACAATCCATTAGAGGACAGTGGTGCAGGATTTCCAATAGAGCCTCCATCAGTGGATCGCAGTTATCCACGTGTTGGAAGTACAATGCATCCAGGTGCATATGGAAATTCAAGAGTAAACAACAAAAGAGAAATCGAAAACCAAATAGTGCCTGGAACCTCAGTAAACAACTTGATGACAACAAAGCAGTTGAGGACTCAAAGGTCATATATGTCCCAATATGGCAGTGTTGGTGACTTAACTGTGCTTGCAAGAAACAAATCTACTTCCAGATACAATAATAGGTACAATGGTGTTGAAGCTTCTGAGAAGCAATCAGCGCTAGATTTGCCTGGCTCTATTCATAAGCAAGATCAGCCTAGAACCAAGGATTCTGCATTGGGATATGGAAATAAGAACAAAAGAATACATTATTCAGGACCATTGGTGCCTCCTGGTGGAAATATAGACGACATGCTTAAAGAGCACGAGAGGCTGATCCAGCAGGCAGTAAGAAAAGCTCGTGATGGCAAGAACAAGGATAACTTTTGA

Protein

Gene

>AfisC6G02574
CCTGTCCGAGAGGGAAAAAAATATTTCCTTTTGCATGTGAATTCATGCCCAAATCCACCATTTTCTTCCGATCATCAAATTTATACTGCAAGTTTGAATCTTCTTTGCAATCTCTACCGTAATTTCCTCTTTCAACATCTGGGTATTGAACAAGTTTTGATATTTCTCAATATATTGGGAGGTTTTTTTCAATTGGATTTCCCTATGTATCGTTCAGCATTATTTCCCTTCCTTCCATGTTATCCTGTACATCGTCAGAATCTGTAATTTGATACCGTTTTGGGTTAATCGTAAAATTTGCGCTTGAGTTCATGTTGTTAAGATCAATAAAGTGAAAGAAAAAATTTCAAAATTGGAGTGTTGGGAGTCAATTTATTGGAGAGTGAAGCTCAAGCTTATGGGCTGCATTTTCTCCAAAGGGATCACCAAAGAGGAGATTGTTGCAAAAGTTGCAAGCTTCAAGAAAGAATCAATCAAATCACTGAGTTTATCCACACATTCAAAGAAGGAGAATTCGGTATCATATGATTTGGAAGCCAACCACCAAAGAAATGGTAGTTCTAACAATATAGTTATTTTGGGAGATGATAAAAGAAGGAAGAATGGTCATCATAGAAGCGTTACCGTTGATGCAAGTTTGAACAAAGAAGATATTAGTTTGAGAAGTGGCAATGTACCCATTAAAGATGCTATTGTGGATGTGCCGAATGGGTTTTCTGGTGAACACGCAAACGCTGGTTGGCCTTCATGGTTGACTTCAGTTGCATCAGAGGCTATTAAAGGATGGTTGCCTCGAAGAGCTGATTCTTTCGAAAAATTAGATAAGGTCAAGTTTTGCTCTACTTATATCCATAGCTAAATTCGATGTAAATTTAGCTATAGTTTAACTTTCGAGCAGATCTTTGCTTTTATCCATTTTACTAGTTGTTCATCTAATTAGTATAAGAATTATTTACATGCATCTTAACCTCCTATAGCCTAGATTGCCCAGACGAACAATATCTAAGTTGCTTCTAGTTGTAAAAACATCATCACATTGAACCTGGTATCACAAGCGGTTATATAAAATGAAGGTAGATTAGTTTGCACTTCTACTAAAGAACAAAGCTATAACCACAGAACCACTACTTTTTCGTTAAGTTACTGCAAATTGTTTCTATACATTAGGTTTAGAAAAGCTGTTGCTCTTTGTTGAATTGCCCCTGCTGTTGTATTGCTTGGTTTACCTAAGGCTGATCCGAACTTAACATTGTTAAATCATGAGAAAACAACATACGCGCTTCTAAAATTTTGCTTAATTTTGCCACGGCCCAATTTAATATCAAAATTATTGCACATTTATCATTTTTTGTATAATACTGAAGAAGTTTGCTTCAGATGATGACCCACTTTTTTTGTTTCAGATTGGACAAGGAACATATAGTAGCGTGTACAGAGCCCGTGATCTTGAAACTGGGAAAATCGTAGCACTTAAGAAAGTCAGATTCGTGAACATGGACCCAGAAAGTGTTCGATTCATGGCCAGAGAAATCGATATTCTACGCAGACTCGATCATCCAAATGTAATAAAACTAGAAGGAATAGTTACTTCAAGAATGTCATGCAGCCTTTATCTAGTATTTGAATACATGGAGCATGATCTTGCTGGACTTGTCATGACACCGGGTAACAAATTCACTGAACCTCAGGTAATCTTTACTACTATCTTTCTCAAGACAAGTATTTTACTTTTTTTGGCTAAGGACTGAAGATAAATTTCAATTACAGGTGAAGTGTTATATGCAACAATTGCTGAGGGGTCTTGATCACTGTCACAGTCGTGGAATTCTGCATAGAGATATCAAAGGTTCTAATCTTCTGGTTGATAGTAATGGGATTCTTAGAATAGGAGATTTCGGGCTTGCTACTAGATTCGATCCTGAGAAGAAGCAAGCATTGACAAGCAGAGTTGTTACATTGTGGTACAGACCTCCTGAGCTTTTATTAGGGGCCACTGAATATGGCGTGGCTGTTGATTTATGGAGTGCTGGTTGTATTCTTGCTGAATTGCTTGCAGGAAAGCCTATCATGCCTGGAAGAACTGAAGTAAGCATGATGTTTGTTTTCATAGTATATATTCATTCACACAATCATGTCACGTGTTGAATTGGTTTCATCTGGTACAGTGATTTAGTGAACTTATTAAACTGCTTGTAGGTTGAGCAATTGCACAAGATATTCAAGCTATGTGGCTCACCAGCAGAAGACTATTGGAAAAGAACAAAAATATCACAATCAACCATTTTCAAACCTCAGAACCAATATCCTCGCCGCCTTTCGGAGACATTTAGAGATTTTCCTTCTTCTGCTTTGAAACTTCTTGATACGCTGCTTGCAATAGAACCAGATGAGAGAGGAACTGCTTCTTCTGCTCTTCGCAGTGAGGTGATTTTCTCTCTCACTATTTGCATTCTTTGATTGATGTTTTGTATCTATATTTTTTGTACGGCCTGAAGAACAATGGACTGATTGATTTATATATTGTTTTCTTAATGCAGTTTTTCACGACAAAGCCTCTTGCTTGCGATCCTTCAAGTTTGCCAAAATATCCACCAAGTAAGGAGTATGATGCTAAGCTTCGGGATGAAGAAGCTCGAAGGTAATACATTTTTCATTACCATAAGTTTTCCACTATCTTTTTCACTCTGAAAGTTTTAACATCAAGGAGTAATGACTAGGGAAAATTATGAGTTGGGAACTAAGCCCTCTCTGTGAAGTTTGGGAATTTGTTCTTTGTTATTTTCGTAACGCTGAAATTCTGAATGTGAACATCGGACAAAGTATATCCAATACGAAGAAAAGTACAAGTTGTTTACGCATTTTTTAAATTATTTTTTTGTTACAGACATAAAGAAGCAGCTATGAAAGGCCAGAGAGCTGGATCTGGAAAAAAAGGATCAAAAACTACACAAGAGAAAACTGCACAGGATACAAAAGATGCCCAGGTACTTTTGTAATGTTTAAAGGTCTACAAACTCATGTATATTGACATGCATAATAACAACAGTCTTCATTTTGTGAAGCAGAAAAAGCCAAACAACAAAAGCTCGAGCGAGAAATACAATCCATTAGAGGACAGTGGTGCAGGATTTCCAATAGAGCCTCCATCAGTGGATCGCAGTTATCCACGTGTTGGAAGTACAATGCATCCAGGTGCATATGGAAATTCAAGAGTAAACAACAAAAGAGAAATCGAAAACCAAATAGTGCCTGGAACCTCAGTAAACAACTTGATGACAACAAAGCAGTTGAGGACTCAAAGGTCATATATGTCCCAATATGGCAGTGTTGGTGACTTAACTGTGCTTGCAAGAAACAAATCTACTTCCAGATACAATAATAGGTACAATGGTGTTGAAGCTTCTGAGAAGCAATCAGCGCTAGATTTGCCTGGCTCTATTCATAAGCAAGATCAGCCTAGAACCAAGGATTCTGCATTGGTATGTTCTTCACTTTGAAAAAGAAATAAATATAACTAATAATCACTCGTGATAATAGTGGTAAGACAGTTGGACCATGGGAATGATACCCCAAACATTATACTTATTGCTGGGATGGTCGAATTAAATATTTTGGATTCAATTTCTTTATGGATACATAATAGCCAAGTTAAAAAACAAAGTCATAAAACAAAGTCATAAAACAACGATACCAGTAATATTAGTGGTGTAAATTTTGGTTGTATAGACAATATTTGAGCTTCACTAATCTGTGCATATATTATAAGTTTATAACCGTGTGTGTGTGTATTTTCTAGCATTTTTATTAACATGACATGTTTAATATTGATTACAGGGATATGGAAATAAGAACAAAAGAATACATTATTCAGGACCATTGGTGCCTCCTGGTGGAAATATAGACGACATGCTTAAAGAGCACGAGAGGCTGATCCAGCAGGCAGTAAGAAAAGCTCGTGATGGCAAGAACAAGGATAACTTTTGAAGTCAAAATAAAATGACAGAAATATTGTAATGGATGAAACATAACAAACAGAATCGATTGTATACATGCCTTTGATTTTGCTTAACGATAAACAAGGATATGAACTGGGCATTGCTGTTCGAGCTGTGATCGGGGAATTCATACATGTGGGTTTATGAGGAAGCTTAAGATGAAGAATCAAACATTATGAGATCATGTTCCCCTATGTGTAAATGACAGTTTCTTTCAACCAGAAAAAAAAAATACTGTTGTAAATATCATTTTTTACCAGTGTAGTTCTATATACTTTTAATGGATATTGA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020246185.1	1.8e-246	probable serine/threonine-protein kinase At1g54610
Swissprot	F4I114.1	5.9e-170	Probable serine/threonine-protein kinase At1g09600
trEMBL	A0A8B9ARU8	2.4e-224	probable serine/threonine-protein kinase At1g54610

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G53050.1	56.87	0.0	663		Protein kinase superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G02574	AT1G53050.1	582	233	7	100	671	96	669	56.87	0.0	663
AfisC6G02574	AT1G71530.1	565	178	7	109	666	118	628	57.70	1e-179	626
AfisC6G02574	AT1G09600.1	588	219	11	94	666	119	692	57.82	1e-179	626

Ortholog group

Species	Genes
Allium cepa
Allium fistulosum	AfisC6G02574
Allium sativum	Asa8G04171.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00069.22	Pkinase	Domain	138	422	235.9	4.4e-70

Gene Ontology

Accession	Ontology	Name
GO:0005886	C	plasma membrane
GO:0002944	C	cyclin K-CDK12 complex
GO:0002945	C	cyclin K-CDK13 complex
GO:0009615	P	response to virus
GO:0005829	C	cytosol
GO:0005524	F	ATP binding
GO:0005615	C	extracellular space
GO:0005730	C	nucleolus
GO:0005794	C	Golgi apparatus
GO:0006397	P	mRNA processing
GO:0007346	P	regulation of mitotic cell cycle
GO:0008353	F	RNA polymerase II carboxy-terminal domain kinase activity
GO:0010564	P	regulation of cell cycle process
GO:0016607	C	nuclear speck
GO:0019908	C	nuclear cyclin-dependent protein kinase holoenzyme complex
GO:0030097	P	hemopoiesis
GO:0030332	F	cyclin binding
GO:0042127	P	regulation of cell proliferation
GO:0043405	P	regulation of MAP kinase activity
GO:0043410	P	positive regulation of MAPK cascade
GO:0043484	P	regulation of RNA splicing
GO:0044822	F	poly(A) RNA binding
GO:0046777	P	protein autophosphorylation
GO:0048366	P	leaf development
GO:0048523	P	negative regulation of cellular process
GO:0070816	P	phosphorylation of RNA polymerase II C-terminal domain
GO:0097472	F	cyclin-dependent protein kinase activity
GO:1903047	P	mitotic cell cycle process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K08819	CDK12_13; cyclin-dependent kinase 12/13	EC:2.7.11.22 2.7.11.23	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network