result

Gene information

Detail information of AfisC6G02598

Location

Gene	Chr	Start	End	Strand
AfisC6G02598	chr6	450621683	450623671	-

Sequences

CDS

Protein

Gene

>AfisC6G02598
TTAACAAGCGTTTAGAAACAAAAGAAAAGCGAGTGCAATGAGTAGGATTCCCATGTTTACAAGTTAAAAGATTCTTTTCCGACAACAAAATCTACCAAAAAAACAAACCTTGGATATCGCATGGGTCCCACTTTCCTTTCTCTTTCAATATAAGCAGCTCTCTTTGCTAAAACTTATCACAAATATTCTCTGCTTTTAAACCTTTTTGATGGAGAAAGTGAAGAAACAAGAAGAAGAAGAGAAGACCAATATCACTACTAACAATAATATTAAGTCTGGGTTAATGAAAGTTTTGGTTGTTGATGACTCTCCTATTGACCGTATCGTCGTTGAGAGACTGCTTCAAAAGAGTGGAGAATTTTTTGAAGGTATTATTCATCTTCTTTCTTCTATCCATCTTCGTTGTGTATGTAATGTTAGGTTCGATTGACCATATTATCACTGCTTACAGTTAAAAAAGTTGTATATCTACCTAAAGATTGGAATAGTATGCGAGGTGTACTTGAAATTGGTTCATAGATAGTATTCAGATTCTTCGTTTTTTACCAGTAACAAACACTGAATATGTCAATTTTCTATGGTGCTATAACTTTGGCTCCCTCAACTGCTATAAAATTTCTATTGTCTGTTACCTTTCAGTGATTGCGGTCGATAGTGGTAAGAAAGCAATGCAAGTTCTTGGTTTAGAAACTGGAAACACTCAATCCTCTAATGCTTATGTAAGAACGTTTGTTGTTTATCAGTTTTTCTTGTTTATAATTTATATATATGAGCATTGTCCGTGTCCCTGAATTCATGTAAAGCTTGAGAATATTGAAATGTATGAATTAAATTACATGCAGGAGCAGAACATTGACATAATTTTAACAGACTACTGCATGCCTGAGATGACTGGCTATGACCTCCTCAAGGCGATTAAGGTACTCAATTCTATTCTTTCCTGTTGCTAATTTTTCATTAATCTTGACTTTATAATTGCCAAATATGTTACAATTGTCTGCTGCAAATTGTCAGGAACACAAATGCCCAAAATATATTCCCGTGATTGTTATGTCATCTGAAAATGAACCACGGAGAATATCCAGGTATATTTCAAACAATTTCTTCTACCACTGATGCCTATAAATCATGATGGGTATTCTACAAGTACATGTGAGTTTTGTAGTGTAAACATACATCTCAGCCATTAAGTTTTAAGCTTTTCATTTCTTAATATACAAACAAAGATTATTGATTAGAAATGTATGGTTTTAATGGTTATGAATACAATGCTGATGACTGTGTTATATAAATGAGTTTGTTTCGCACCTATCGATGTTCATAAATGTTAATAGTGATGCAAACTTGAAAGTTGGTTGGTCCTATTCCTATGAGGTCATACGGAAATGGACAGTTGCATGTATGAATCAATATGCTGAACTAATAATATTTGAACAAGTGCGTAATATGACAAATACTTTTAATTAGGTTAGATTCTGAAGATCTTATCAAGAAAATTGATCATTACAATCCAGGACCAGCATGATAACAAGTAAACATAATTCCACCTAAAAGTCTTCTTATCCATAACTTATTTTTTTGTCATCAGTCTCTATCTTCTCTTAAACTCAAACTTTTTGTTTTTTTACTGGCCGGAACAAAATAAAACTGTATTTCAAAACATAACTTGTATATTTTCATTAACTTAAGTACAATATTATTTTAAATCACAGGTGCCGTGACATTGGAGCAGAGGACTTCATCATAAAGCCTCTTCAAACTAAAGATTTGCAGAGATTGAGAAACTATGTACAAGGACGGGAGTCCAAAAGGAAAATACAGTTTGATGTTGCAAATGAAAGCAGCGTCACTGAGAAAAGACCTAGGCTCACTGGTGTTGCAGCTGCATAATAAATAAAAAGTTATATCAGTAGACATATATATCGCTTATTGAACATTCCTTATATGAACCCAGAGCTATATCTAAAGAAGAACAATTATCAGTAATTT

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020246744.1	1.5e-54	two-component response regulator ORR1-like
Swissprot	Q2HWG4.1	4.4e-38	OsRRA9
trEMBL	A0A5P1E5C0	1.1e-54	Response regulatory domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G41310.1	46.84	5e-32	134	ARR8;ATRR3;RR3	response regulator 3

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G02598	AT2G41310.1	158	75	2	28	178	11	166	46.84	5e-32	134
AfisC6G02598	AT3G57040.1	140	62	3	26	156	9	146	47.86	1e-31	132
AfisC6G02598	AT1G59940.1	137	65	3	21	156	28	160	48.91	2e-31	132

Ortholog group

Species	Genes
Allium cepa	g480012.t1
Allium fistulosum	AfisC6G02598
Allium sativum	Asa8G04155.1
Arabidopsis thaliana
Oryza sativa

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00072.21	Response_reg	Domain	28	150	81.1	5.7e-23

Gene Ontology

Accession	Ontology	Name
GO:0000156	F	phosphorelay response regulator activity
GO:0000160	P	phosphorelay signal transduction system
GO:0005515	F	protein binding
GO:0003677	F	DNA binding
GO:0005829	C	cytosol
GO:0004674	F	protein serine/threonine kinase activity
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0009736	P	cytokinin-activated signaling pathway
GO:0009793	P	embryo development ending in seed dormancy
GO:0010161	P	red light signaling pathway
GO:0042752	P	regulation of circadian rhythm
GO:0046777	P	protein autophosphorylation

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K14492	ARR-A; two-component response regulator ARR-A family	EC:-	Plant hormone signal transduction	ko04075

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network