result

Gene information

Detail information of AfisC6G02605

Location

Gene	Chr	Start	End	Strand
AfisC6G02605	chr6	452474821	452476483	-

Sequences

CDS

>AfisC6G02605
ATGACACTGCAGACAAGATTATGTTTGAATGGTACGGGTGATGGAGTACCCGATCAAGAGCAACAGCTATCTGGCAATGGAATAACAAAAATGAAGGATTCAGAAAAAGGTGCAGACTCAGAGTTATGGCATGCTTGTGCTGGAAGTATGGTGAAAGTGCCAGCAATCAACACTTTAGTGTACTACTTCCCCCAAGGTCATGCAGAACATGCTCAATTTCCGCTTCACAACCTTCACAATATGAACAGGTCTCACGTGCTTTGCCGTGTAGTTTCTCCAAAGTTAATGGCTGATCCTGAAACCGATGAAGTTTATTTCGAAACCCGCCTAGTCTCCGTAAAGCAAAATCCTGGAGCTTTCGATGATACACCAGCTGAAGTACCCAAAATACCCTTATGGTTCACAAAGACTTTGACTCAATCCGATGCAAACAATGGAGGAGGCTTTTCAGTGCCTAGGCAGTGTGCTATTACGGTATTTCCAAAATTGAACTACCAAAATGACCCTCCAGTCCAAAGCATATCTTGCATAGATGTGCATGGAGAGACATGGACTTTTAGACACATATACAGAGGGTCGCCTAAAAGACATTTGTTAACCACCGGTTGGAGCACGTTTGTGAGTCAAAAGAAGCTCATGGCTGGTGATTCTATTGTGTTTTTAAGGAAGGAGAGTGGAGAGATTCATATAGGCATAAGAAGGATGAAGCCTTCTTATACTTGTACAAAATTCCTTGGTTTTAACAACAGTGACATGTTCAGCAGGAGGACAAGGAAGGAGTCCGTAATGGAGGCAGTAAAGAATGCGTTGAGTGGACAGGTGTTTGAAGTAGTGTACTATCCAAGGGCAGGTACCCCAGAATACGTGGTGAAGGCAGAAGTGGTGAGAGAGGCAACGATGATACCGTGGTGCTCAGGAATGAGATTCAAAATGGCAGTTGACTCGGAGGATCAGTCAAGGATTAGTTGGTTTATGGGAACTGTTACTGGGGCAACTTATAGGCAAAAGTCGCTATGGAAACAACTAGAAGTGAGATGGGAAGATGCAGGAAGAGTTCTGGAAGATGTAAAGAGAGTGAACCCATGGTCGGTGGAGCCAGTTTCGAGCATGTACATGCCAACTATACATTTGGATAAAAAGCCATGCTTGCGGTTGCCTCCTTATGATTATTTGTCTTCTATATCTCCTTTGATCTTCAATGGCCACCAATTACAGTTGCCATTACCACAGCTGCAGTACCCTGCAATTTCAGGCATACAGGGATCCAGGCATAATAACGATTACACTAGTAAATTCACTGCCACCGCTGCCACAAATAAGCGCAAGAGCAGTTTTAGGTTTAGGGATGATGATGTAGGTAAGGATGATATAGCCTGTGAACTAACAATTGGAGTTGGCCATGCAACTGCTGCTGCAGCTAGTACTTCTGCTTCTGCTGCTGCTGTTTTTGTGCTATTTGGGAAGACAATAAGGAACAATGCAGAAGAGGAACAAATTGCTCATGTTAGCAGTTCTGAGAACGCAAACCGTGCATCTTCATCATCTGACCGTGAAGTTGATGATAATGCGTTGCATCCCATGATTAAGTTCATATAA

Protein

Gene

Functional annotation

Database	accession number	e-value	annotation
nr	XP_021896197.1	2.4e-108	LOW QUALITY PROTEIN: auxin response factor 10
Swissprot	Q9SKN5.1	7.9e-101	Auxin response factor 10
trEMBL	A0A200R5U9	4.6e-106	Auxin response factor

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT2G28350.1	42.39	2e-101	366	ARF10	auxin response factor 10

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G02605	AT2G28350.1	545	220	15	33	490	2	539	42.39	2e-101	366
AfisC6G02605	AT4G30080.1	545	235	17	34	509	12	542	41.65	3e-101	366
AfisC6G02605	AT1G77850.1	385	175	9	39	385	17	395	43.12	2e-80	296

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02362.18	B3	Family	134	234	72.3	2.2e-20
PF06507.10	Auxin_resp	Family	265	341	75.5	2.6e-21

Gene Ontology

Accession	Ontology	Name
GO:0000987	F	core promoter proximal region sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0006351	P	transcription, DNA-templated
GO:0007389	P	pattern specification process
GO:0009734	P	auxin-activated signaling pathway
GO:0009738	P	abscisic acid-activated signaling pathway
GO:0009743	P	response to carbohydrate
GO:0010154	P	fruit development
GO:0010208	P	pollen wall assembly
GO:0010468	P	regulation of gene expression
GO:0031540	P	regulation of anthocyanin biosynthetic process
GO:0048366	P	leaf development
GO:0048441	P	petal development
GO:0048442	P	sepal development
GO:0048589	P	developmental growth
GO:0048829	P	root cap development
GO:0048830	P	adventitious root development
GO:0051171	P	regulation of nitrogen compound metabolic process
GO:0051301	P	cell division
GO:0052543	P	callose deposition in cell wall
GO:2000112	P	regulation of cellular macromolecule biosynthetic process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K14486	K14486, ARF; auxin response factor	EC:-	Plant hormone signal transduction	ko04075

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network