Detail information of AfisC6G02640


Location
GeneChrStartEndStrand
AfisC6G02640chr6461005423461009695-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrKAF3439315.11.6e-178hypothetical protein FNV43_RR17592
SwissprotQ6YVY0.15.4e-168Auxin response factor 7
trEMBLA0A8K0GXW81.1e-178Auxin response factor

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT1G59750.162.105e-169 590ARF1auxin response factor 1

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag406450.t1
Allium fistulosumAfisC6G02640
Allium sativumAsa8G04072.1
Arabidopsis thalianaAT1G59750.1; AT1G59750.2; AT1G59750.3; AT1G59750.4
Oryza sativaLOC_Os02g35140.1; LOC_Os04g36054.1

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF02362.18B3Family12522675.12.8e-21
PF06507.10Auxin_respFamily251333109.18.5e-32

Gene Ontology
AccessionOntologyName
GO:0005515Fprotein binding
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0005634Cnucleus
GO:0006355Pregulation of transcription, DNA-templated
GO:0009734Pauxin-activated signaling pathway
GO:0043565Fsequence-specific DNA binding

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K14486K14486, ARF; auxin response factorEC:- Plant hormone signal transductionko04075

Expression pattern in different tissues

Expression pattern in BioProjects

Click here to link to expression search in BioProjects.  



Co-expression network

Click here to link to co-expression network search.