result

Gene information

Detail information of AfisC6G02729

Location

Gene	Chr	Start	End	Strand
AfisC6G02729	chr6	477381225	477383799	+

Sequences

CDS

Protein

Gene

>AfisC6G02729
TATGATCTTTTATTTTAAAATTAAGAGAAAATAATTAAAAAATGGGCAACTGCAAAATAATAATGAAGAGTCTCTTCCTCATCCTCTCAATCTCAACACCACAAAACCAACAACAATGAATACCTAAATTCAAATACAAAACCAATTCCCAAATCCAAAATCAAATCAAAACGAACAAGTATGCGGAAATTAAAAGCGGTACCCGAGACCGATAAAGCCACAGAGCCCGAGATCCGCTACCGCGGCGTGCGCCGGCGACCATGGGGTCGGTACGCCGCCGAGATCCGCGACCCGGTGAAGAAAGCCCGCGTCTGGCTTGGTACCTTCGACACCGCGACCGCCGCAGCACGTGCTTATGACTCCGCCGCACGAGCTATGCGCGGCCCTAAGGCCAAAACCAACTTCCCCATCCTATCCCCTCCTCATCAGCCTCCGCCTATGACGATCAATTTTCCAGCCACAAGCGGCATGAGCTCCACTGTGGAGTCGTTCGTCGTCAGACCGACAAATCGGGAGCCGACGCTGGTGGTACATGATGGTCTTGATTGTAAAAGCGACTGTGGCTCGTCGGATTCGGTTGTGGACGATGCTGACGTGGCGGGATCTCTCGTGGTGAATAGTAGGGTGGAGATACCAGAGCGAGTATTTTTGTTTGATTTGAACGAGATGCCAATTGATGATGGCGAGGACGATGAAATCAAGATCACTGCGTTGAGACTTTGAACGGAAACTTATGATTTGTGGTATCAGGTTCTTGCTTCTACTTTATTTTATTATTAAGTTATGAAATCTGTGATTTTGATGATTTTGCATGGAGATGTGAAGAAGTTGTATACGGATTGGTGTTAAGCCACTAAATTGGATGAAATACGATTATATAACTTAAAATCCCTGTCTTCTTAGAAATCATACCCTTAAACTATGAAATAGCTGTGTTTTAGCTGTTATTATTAATAGTAAATTCATATCGGATTGGATTCCGGTATCTAACTGAATGAAGCTTTAGTGTTGCATATTGCGAATGTTCAACAAATGATAACAGTTATTATCTTACTTAATATCATATGCCCTGAATCCCTGATTGTGAATCTTGAATGTACTAAGAATCATGATTGGTGTTTATATGGAAATGTCACAATGCAAACAAGTGCGCATTTATTTAAACTCAACCTAAATGATAATAATTATTCTTACTAGCAAAATTATATTTGGTTCGCATAATGAACGACACTGTAAAAGATTTGTACCATGCATCCTATTGTTGGCCAGGTTTGCGTTCTTCCTTGAGGCATGACTGCTTTCGTGAACATCATATTTGTGAAAATTATATCCATAGCTATTTCATTTCACGAAACCTCGTTTTTTCTGACTGTATTTCTTTAATTTTTTGCAGTCCCCTTAGCATTTTGTTTCGTTTCAGTGATAGTAACATGCTTAACAATTTATTGCTGCTTTGCTGTTTCCTTAGCTATGTATTTTCCATAGTAGCTTGCTTTGTTGTATCGGTAGCAATTTATTACTGCTGTTATTATAGTAACATGCTTGCTTGACTAGTTACTTTGGACTATTGTATGCAAGTCTGAATGTTGGGTTACTCAGCACCTTACAAAGCAGTGGTGGGTGGTTCATATGATACCGTGAAAGAAAGAGCAATAAATTGAGTAGAAAAAAAACACGTACAACAATATTTGTTAAAAGCCGATCATAATTAAATGCTGTCATATTTGCTGTTTTTTTTTCTTTCCTGATGCTGCAATGACAAGTTCTGTCATTGGAAAGCAATTGCTGCAGTGTTTCTACATTTTGGCTGTCCTCTTACGTATTGCTTTTGTACTGTCATTTCCATTCAAATTTGCCCCAGTTACGGTTTAAAATTTCATTCAAATCCTTGAGTACATAGATGAAGAATTACTCCATGTTTATGCATTAACAGCATGATTCAATTTCTGCAATTAATTACTTGGAATCCATGGACTGGAAACATAAAAGGCAAAACAAAATAAAACACACTTATTAAATGAAATTTGTTCCAGCACTAAAAATGGGGCCTCCGACATGTCGCTTTGTAAGGTATGATTATTTTTGCCGTGTTCGATGATAATTTTTCATAAAAATAATACCTCTTTCTCAGATTTCAAAACTGAAGATGCATGTGCCAGGATTTAATCTGATATATTTTTCGAGTAGTGTAGCGTAGGATGGAGCGAAATGTCTTCATTCAAAAGTTCAAATGAATAATTCTTAAAATCAATTCTATTCAAACCCTTTCCTGTATCACAAAGTCCTTTACTTTGGTCCAAGATGCATTCAAATGGAGCCTTCTGCAAGCAATTTGTTATAATAATTAAAAAAAGTATTGCATTGCTTTCGATGATCGTTTGCGAATCATCTTTTGTTTCTTCTTTTTCAAACCTTGCGTTAGTTTGTGTGCAATAGGTTTTGCTTTTCTGTTTTGTTTATCAATTTTGTTTGAGACATTTGCATTGGTTTGGATGGATGACTAGTCTGCACAGCCTAGCTAATGCTATTTCACACGGCAAGTTGCACGCTAGAGATGGGAAGTTCAATTTTATAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_016166166.1	4.5e-35	ethylene-responsive transcription factor 3
Swissprot	Q9SXS8.1	1.9e-30	NtERF5
trEMBL	A0A444YF97	3.2e-35	AP2/ERF domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G20310.1	69.62	2e-26	115	ATERF-7;ATERF7;ERF7	ethylene response factor 7

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G02729	AT3G20310.1	79	24	0	6	84	13	91	69.62	2e-26	115
AfisC6G02729	AT1G50640.1	61	9	0	17	77	25	85	85.25	2e-25	111
AfisC6G02729	AT3G15210.1	78	19	1	4	78	6	83	71.79	6e-25	110

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00847.17	AP2	Domain	19	68	48.6	6.4e-13

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0016021	C	integral component of membrane
GO:0001944	P	vasculature development
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0051726	P	regulation of cell cycle
GO:0005829	C	cytosol
GO:0005730	C	nucleolus
GO:0006970	P	response to osmotic stress
GO:0009880	P	embryonic pattern specification
GO:0009414	P	response to water deprivation
GO:0009734	P	auxin-activated signaling pathway
GO:0009736	P	cytokinin-activated signaling pathway
GO:0009740	P	gibberellic acid mediated signaling pathway
GO:0009749	P	response to glucose
GO:0009788	P	negative regulation of abscisic acid-activated signaling pathway
GO:0009864	P	induced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010030	P	positive regulation of seed germination
GO:0010105	P	negative regulation of ethylene-activated signaling pathway
GO:0010200	P	response to chitin
GO:0010286	P	heat acclimation
GO:0010445	C	nuclear dicing body
GO:0044212	F	transcription regulatory region DNA binding
GO:0045892	P	negative regulation of transcription, DNA-templated
GO:0019760	P	glucosinolate metabolic process
GO:0031053	P	primary miRNA processing
GO:0034059	P	response to anoxia
GO:0042991	P	transcription factor import into nucleus
GO:0043565	F	sequence-specific DNA binding
GO:0048825	P	cotyledon development
GO:0051301	P	cell division
GO:0070878	F	primary miRNA binding
GO:0071456	P	cellular response to hypoxia
GO:1900150	P	regulation of defense response to fungus
GO:0090708

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K09286	EREBP; EREBP-like factor	EC:-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network