result

Gene information

Detail information of AfisC6G02730

Location

Gene	Chr	Start	End	Strand
AfisC6G02730	chr6	478538133	478540586	+

Sequences

CDS

>AfisC6G02730
ATGGCTTCTTGTATATTTCAAGCACTAAGGTTCAAAAAGAGAAACACAAGCAACACGATTTCGCTGCCTTCACCTCCACAGCCATCGCTGCCTTCTTTTGCTTCTTCATCTTCAGTACCAAAAAGAAACAACTTATCTCCTGACCTAGAAATCATGGAAAAGAGGAGATGGGACAGTTTAGAGTCATGGTCAATGTTGTTAGACCCTACCAACCCTGAAGGATTTGAATCGACTCAAAGCGGAGAAAGAGAGGAATGGATGGCTGATCTTTCTCAGCTGTTTATTGGAAATAAATTTGCTTCTGGTGCACATAGCAGAATTTACAGGGGAATTTACAAACAGAGGGCAGTTGCGGTTAAAATGGTTAGAATTCCTGAACAAGATCCTCAAATTAGAGAGAAACTCGAAGAGCAGTTCGAGTCTGAAGTCGCTTTTCTCACTCGCCTCTATCATCCAAACATCGTGCAGTTCATTGCAGCATGCAAGAAGCCTCCAGTATACTGCATTATCATGGAATATATGTCTCAAGGAACTCTTCGAATGTACCTTCACAAAAAGGAACCATATTCTCTATCAACCGAAACAATACTGAGATTATCTCTAGACATATCTAGAGGAATGCAATATCTTCACTCGCAAGGAGTAATACATAGAGACCTAAAGTCTGATAATTTGCTCCTTAATGATGAAATGAGAGTAAAAGTTGCTGATTTTGGGACCTCTTGCCTCGAGACTAAGGGTAAAACTTCCAAGGGCAATATGGGAACATATAGATGGATGGCACCAGAGATGATAAAGGAAAAACCATATAATAAGAAGGTTGATGTTTACAGTTTTGGTATTGTGATGTGGGAGCTTACCACTGCTCTTGTTCCTTTCCAAGGGATGACTCCAGTTCAGGCTGCTTATGCTGCTTCTGAAAAGAATATGAGACCTCCGCTGTCAACTACATGTTCACCAGTGTTCAACCATCTGATAAAGAAATGTTGGTCAGCGAGTCCATCAAAGCGGCCTGATTTTGGTTATATAGTAGCTACACTAGAAAAATACGATGCATGTCTAAGAGAGGGACTTCCGATTCATGTACATCAAGAGCTGAATATTAGGAGCTCGATTCGAAGTATTTTTAAAGGATGTGTTCCTAATTCTTCTTCAATACCTGTACATGCTTGA

Protein

Gene

>AfisC6G02730
ACTAGATAATGTTTTTTTCTCCTCCAACATAAGCGTGCTAGTTTTATTCACTTAAATACTTTTTTACAGAGAAAAAGTTATGAATTCTGAACCCCCTGAAATCAAACTTGCCTACTTCCATTGTCATTCTTGTACAAGAATGCAGTGGGAAGTAATCTGTAACATTTAAATAAGAATCAAGAAATGGCTTCTTGTATATTTCAAGCACTAAGGTTCAAAAAGAGAAACACAAGCAACACGATTTCGCTGCCTTCACCTCCACAGCCATCGCTGCCTTCTTTTGCTTCTTCATCTTCAGTACCAAAAAGAAACAACTTATCTCCTGACCTAGAAATCATGGAAAAGAGGAGATGGGACAGTTTAGAGTCATGGTCAATGTTGTTAGACCCTACCAACCCTGAAGGATTTGAATCGACTCAAAGCGGAGAAAGAGAGGAATGGATGGCTGATCTTTCTCAGCTGTTTATTGGAAATAAATTTGCTTCTGGTGCACATAGCAGAATTTACAGGGGAATTTACAAACAGAGGGCAGTTGCGGTTAAAATGGTTAGAATTCCTGAACAAGATCCTCAAATTAGAGAGAAACTCGAAGAGCAGTTCGAGTCTGAAGTCGCTTTTCTCACTCGCCTCTATCATCCAAACATCGTGCAGGTTTGCATATTTTTTTATATGTTACATAGATCTATTGGTGAACTACTGCTTTTCTGCTCTGTAGGAAAGTGATTGTATTATTGTAACTTATATTTTACAAGGTTATATAATATGATGAGTTGAATAACATTTGTCATAACTACATGTATGGTAGTTGTTTTAAATATACGCTAGACTACATTTTGTTACATTTAAAAAATAAATAAAGAAAAGAGAAATTAAAGAAAGAAAAAACAAAAAAGTCAAAAAACAAAAAAACAAAAAACAAAAATAATAAAAGAAGAAGAAGAAGAAGAAGCCAAGTTTCATAAATTTCATCATGAAGTAGTGTTGTTAGTGGGTAACAAGAAGAGAGAGTGGAAATATAAAGAAGATGAAAATGGTTGAAAAAAATTAATGTCCTTGACCGAAAAAGGTAATCATAATACTTCTGCATAGTATGTACATGCTCAAGTTTTGAATCACAAGTCTTAAGGTTTGAAGTTATTTACACCATATAGTTGTAGGGTTGAATAACTCTATCATTCATTGGTTTTCAACTAACACAGATGACTCAAATAACTTCATTATAATTCATTTGTTCTTCTATTTCAGTTCATTGCAGCATGCAAGAAGCCTCCAGTATACTGCATTATCATGGAATATATGTCTCAAGGAACTCTTCGAATGTACCTTCACAAAAAGGAACCATATTCTCTATCAACCGAAACAATACTGAGATTATCTCTAGACATATCTAGAGGAATGCAATATCTTCACTCGCAAGGAGTAATACATAGAGACCTAAAGTCTGATAATTTGCTCCTTAATGATGAAATGAGAGTAAAAGTTGCTGATTTTGGGACCTCTTGCCTCGAGACTAAGGGTAAAACTTCCAAGGGCAATATGGGAACATATAGATGGATGGCACCAGAGATGATAAAGGAAAAACCATATAATAAGAAGGTTGATGTTTACAGTTTTGGTATTGTGATGTGGGAGCTTACCACTGCTCTTGTTCCTTTCCAAGGGATGACTCCAGTTCAGGCTGCTTATGCTGCTTCTGAAAAGGTTTGCTTCTAATTTAAATTTAATGTTTCAGTGTGAGTTATGATAATTGATTCAAAACTAGCTGCACAACCAACTGCCTTGAACTAAAATCTTGATTCAAATGCATATGCATTCAACGATATATTCTTACTAAGAGAACTTACTTTGGTGTCCTGGAAATTATGATGTATTTTTTAGCATAATTAGATTTCCAAAATACACTACTACTGCTAAAATATGTACCAAAATTTTAGAGCCATTTGAACTAAGATCTAATGACCCATACCAATGGATGAACATACTCTATAGTTTCATAGGAGTAGGTGTTTTTATCTTGTATTCATTATTGCATTAACAACAAGTTTTGTAATACTTAAGCAGCAACTTTTTTGAAATGTATTTTTCAGAATATGAGACCTCCGCTGTCAACTACATGTTCACCAGTGTTCAACCATCTGATAAAGAAATGTTGGTCAGCGAGTCCATCAAAGCGGCCTGATTTTGGTTATATAGTAGCTACACTAGAAAAATACGATGCATGTCTAAGAGAGGGACTTCCGATTCATGTACATCAAGAGCTGAATATTAGGAGCTCGATTCGAAGTATTTTTAAAGGATGTGTTCCTAATTCTTCTTCAATACCTGTACATGCTTGAAGTTATTGAAGTATGGACAGGTTTGGTATTGCCTAATGTACTGTATTTATTTATTGTTTATTTTTTTCCATCCTTGTATAGTTGGAGACTACGTACTGTGTTTAAAATTATATGTTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020268125.1	2.6e-181	serine/threonine-protein kinase HT1
Swissprot	Q2MHE4.1	2.2e-148	High leaf temperature protein 1
trEMBL	A0A5P1EYL5	1.9e-181	Protein kinase domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G62400.1	76.06	4e-153	538	HT1	Protein kinase superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G02730	AT1G62400.1	330	77	2	52	380	1	329	76.06	4e-153	538
AfisC6G02730	AT5G58950.1	326	169	4	49	371	166	481	44.17	2e-83	306
AfisC6G02730	AT4G31170.3	265	140	0	84	348	122	386	47.17	1e-75	280

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF07714.14	Pkinase_Tyr	Domain	95	347	218.1	1.1e-64

Gene Ontology

Accession	Ontology	Name
GO:0000165	P	MAPK cascade
GO:0005515	F	protein binding
GO:0001666	P	response to hypoxia
GO:0002831	P	regulation of response to biotic stimulus
GO:0005829	C	cytosol
GO:0004674	F	protein serine/threonine kinase activity
GO:0004712	F	protein serine/threonine/tyrosine kinase activity
GO:0004871	F	signal transducer activity
GO:0005634	C	nucleus
GO:0005768	C	endosome
GO:0005789	C	endoplasmic reticulum membrane
GO:0008219	P	cell death
GO:0009617	P	response to bacterium
GO:0009620	P	response to fungus
GO:0009651	P	response to salt stress
GO:0009658	P	chloroplast organization
GO:0009686	P	gibberellin biosynthetic process
GO:0009738	P	abscisic acid-activated signaling pathway
GO:0009744	P	response to sucrose
GO:0009750	P	response to fructose
GO:0009873	P	ethylene-activated signaling pathway
GO:0009968	P	negative regulation of signal transduction
GO:0010119	P	regulation of stomatal movement
GO:0010182	P	sugar mediated signaling pathway
GO:0018193	P	peptidyl-amino acid modification
GO:0043005	C	neuron projection
GO:0033554	P	cellular response to stress
GO:0031347	P	regulation of defense response
GO:0032101	P	regulation of response to external stimulus
GO:0044431	C	Golgi apparatus part
GO:0046777	P	protein autophosphorylation
GO:0048510	P	regulation of timing of transition from vegetative to reproductive phase
GO:0071281	P	cellular response to iron ion
GO:0098542	P	defense response to other organism
GO:1902531	P	regulation of intracellular signal transduction
GO:2000035	P	regulation of stem cell division
GO:2000069	P	regulation of post-embryonic root development

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network