result

Gene information

Detail information of AfisC6G02960

Location

Gene	Chr	Start	End	Strand
AfisC6G02960	chr6	518148233	518155192	-

Sequences

CDS

Protein

Gene

>AfisC6G02960
GTTTGTCCTTCAAACCTTTCCATTAATGCTTTCTACGAACCCTAGCTCCTTCCTATTAATGGCCCTCAATCCCTCGTCTCTTCGATTTATCATCATTCAAAACCTTGAATTTACCTTCCTGCCGTATTTTATAAAGGGCGTTCTTCATTCAGGTAATAAGTATTTCTGACTCTACGATAAAAAAAATTACTGTATATCATCCATACGTTCTTCTCTCTCTCCTCTTTTACATTGTTATTTTTTCTCCCTAAATTTCAAATCTATCTGCAGATTATTCTTGTCCGATCCTATCACGATGCAGTTCATTCTTTTCAAAACTTAATTGTTTGGGTTCCGTTTTTCGAATAAAAGATAGGAAATACATGGAAATTTGATCCAAATTTGTTGCTATTTCTCTTTTACTGTGTAAAAATCGGTTGGATTGGAGCATAGGTCTTGATCGGTTCCCAGCTTAAGACCCTCCTTTGAACTTTGTTTATTGGTTTGCTTGGTTAGTTAATTTGCAATACTCATCTTCTATACCATTTGAAATTTGATATGTCGTTCAGTGAATTTTGGGATTTGGGGTTTCTAGATTTTGTTTTTGTTTTTGTTTTTAATTATTGATTTTATAGGGGAAATGATATCTACCATTAATTTTGTCTTCAATTTGATAAATTTTGGAATCCATAAGGAAAAAAATGAACGACACAAAATATGCTGAAAAAGAAATCTTTAAACAATGGATATAAAGATCCAGATTATAGTTTGTCATGATATCGCTATTTATTAGCCTTGTAATATGTTATAATAAAGCATTCTATACAAGAAAAGTTGATTCTAGTTTGATTTTGATTTTACATAATAGAAATTTTTTTGAATCCATAATAAGAAAAGTTGATCCTGCTTTTCTTCACCATTAATTTCCCTTTTACCCTTCACAAGTCGTTTTATAGTGTACAACCCCCACTAATATTTGTCTCATAGATTCTTTGATTTTATTATTTTTTAATTGGGAGGGGATATTGAATGTCATGGAAAGGTTTATGTGCAAATTAGGTGAACTTCTGGGAAGTTGGTGCTTTTAGACTTAAAATTGCTACAATTGATCAAGTACCTGAATCAAACGTAGGGAAATGCAATTTGACTTCTTAGTATAAGTCTAGAATCTTTAGTGATTGGTTTACTTTAGTTATTTTCTCAAGGTAAAAATTGTGTTCATGATATATATAGATAGATGATGCAAACAGCATGAAATCTGTAAAGGTTAGTGTATGTCAAATTATGATACATTTGAATGGATCAATTTTAACTCTGATCTATATTGATCTAATGTAATTTTTAGGTTTCTATAAAATCTTTATCAAGACAACATGGGTTCTCCAAATGCAGCCAATGGTGGCCTAAATCCTAAGCCATCAATGGCCGATGCGTTACAATATGTGATGGATGTGAAATCTGAATTCCAAGATAAGATCGAAAAGTATGATGATTTCCTTGAAGTCCTGAAAGATTTCAAGAATCAGAGGTTTGGCAATCTTGGCTTTTACATGTGTGTATGTATGTATATGTGTGTGTATGTATGTATATGTGTATGTGTATGTATGTATATGTGTATGTATGTCTGTATATGTCAATGCGTGTGATTTTTTTTTTTCAATTTGCAGAATCGATACCGTCGAAGTGATTTTAAGGGTGAAACAATTGTTTAAAGGCCACGACAGTCTTATTCCTGGTTTCAATGCATTCCTCCCTACAGGCTATGAAATCAAGCTTGATGAGAACAACCGAACTGATTTCGGAAAAGCAATTGATTTGGTAAAAAAAGTAGAGGTCTGAATACATTACATGAATGGTTTAAACTCAGTATGTTATATGTAAGTTTTGATATCAACAATTATGCTCAACTTGCAGCGTCGTTTCCATACCGATAAGAATGTATACAAGTCAATTTTACGTATTCTTAACATGTATTTGAAGGAGCACAAGCCAATTACAGATGTCTATGAGGAGGTTATAAACTACGTCTCCATTATTTTTAGCTATGTTTGATAAAATAAACAGCAAAGTTTAAAAGCTGTTTTATTTGCAGTTAGCTGCACTACTTGAAGATCACAATGATTTGCTTGAGGAGTTCATAAACTTTTTTCCTATTACACCTCCGCAGCTCTCCACAGGAAGAACTCTTTTGCACAGAGGGGATACGGTATTCATCCGCTTTTAGTTCTATAATATTATTGTTAGGTGGTTGATTAGCTAAATAAGGTGCCAATCACAAATGTTAATTTATTGAGCTAAACCGAAACATCAATTTTATGAGGTTAATACAAGGAATATCCACATTTGAAACTAAAAATCAGTTCTGACTGAACTTTTGATTTGAAATTAAAATGCTATTATGACTTATAGTTAAAGGAAAATTGCATTATTATGAGTATTAACATTTGCTGTATGATATTGATCAGGATACTTGTGTTGATCAACTTGAACACGATAATGATTATAAAAAAAACCAAAAAATTCAACAATAACAACAATTAAGCCATTATTCCCAAACAAGTTGGGGTCGGCTAGAGATGAAACCCAGACTAAATGACAAAGTCAATTTAAAAGTCATAACAACAACAACAACAATAATAACCAAAATAATAATAATAAAATAAAGTTAAATAAGTAAACAAATAATAATAATAATAACTAAGTAAAATAAATAAATAAAAAACCATGATGATAATAATAATGGTACTAATAGTAATATTGATCGAAGATCAAATACAACGACTTAGACTCCTACTTACTAGTCCTATAATCTAAAACTCATAACACTACCTCTAAATCAATCTTAAGCAAAAAAAACTCCTAGCTTATGCTTCTGGTACGTGGATCGCTAACTTCAACGTGCTTTTGTCCGACACCAGCTTTTCACATATATTTCAATCCTTCAAGTTCCTTTTTACTACTTCATTCCATGTCAACCTTGGTCGACCTCTACCTCTCTTTGAGCATTCGACATGACCTATAAGTCCAACACGCACAGGTGTCTCGGGAGGCCTTCGTTGGAGATGTCCAAACCATCTTAAGCGGTGTTGAACTAGCTTCTCCTCAATTGGTGCTACTCCAAGTTTATTGCTTATATCATCATTTCTAATTCGATTTCTTCTTATATGACCGCAGCTCCATCGCAGCATACACATCTCTGCTATGCTTATCCTGTGGATGTGTTGACTTTTAGTAGTCCAACATTCTGCACCATACAACATCGCAAGTCTAATTGCCGTTCTGTATCCTTTAAGCTTCTATGAGACTTTCCTGTCACAGAGAATGTCAGATGCTTGTCGCCATTTCACCAATCCCGTTCGAATTCTAAAACTAACATTTTCATTAATATCACCATCATACTGGAACACCGATCTAAATATCGAAAGGATTCCTTCTTGGGAGCTACTTATCCGGCCAGAGTGACAACTCCATCCTCTGACCTAGCACCGTTGAAATCTCACTTCATATTCTCTGTTTTAGTTATGCTAAGCCTAAAACTCTTTGATTCTAAAGTCCGACTCCACAGCTCCAGTTGTCTATCAATCCCAATTTTATTTTCATCAATTAGCACATCATCAGCAAAGAGCATACACCAAAGAATCTCACTTTGTATACCCTTCGTTAGCTCATCTTCATTAGGGCAAAATGTAGAGCTTAAAGCTGTGCTATGTTAATGGGAAAATCACTGGCTTCATCCTCGCATGATATTGATCAGGCTACTTGATAAGAGTAATGTACTTTGTTGGGACTCTTCTTTTACAGAGCCCTCCATATAACCTTTTTCGGTACTTTGTCATAAGCTTTCTCCAAATCAATTACCATGTGTAGGTCCTTCTTTTGCTCTCTAAACCTCTTCATAAGTTGTCTTATTAAGAAAATTGCTTCTGTGGTCGACCTTTCAGGCATGAAACCAAATTGGTGTTTTTAAAACGCTTGTCATCCTTCTTAATTGATGCTCAATGACTCTTTCCCAAAGCTTTATTGTATGACTCATAAGCTTAATTCCTCTGTAGTTTGTGCAACTTTGAATATCTTCTTTATTTTTAAAAATTGATACCAATATGCTTCTCCTCCATTTATCTGGCATCTTATTTGAGTTGAAAATATTATTGAACAACTTAGTTAGGCAGGCTATCCCTGTATCTCTAAGGCATCTTCATACCTCAATGGGATGTCATCAGGCCCCAATGTCTTGTCTGCTTTCATCCATTTTAGAGCCTCCTTTACCTCGAACTGTTGAATTTTCCAAACAAAATGTCTACTGGTGTCATCAAAGGAGTTGTCCAGCTCGATCGTAGTGCTATCACCTTCTTCATTGGATAGCTTGTCGAAGTAATCTCTCCATCTATTTTTTATCTCATCGTCCTTCATCAAAAGTCTATTATTGTCATCCTTGATGCATTTAACTTGGTTGAAGTCTCCCGTCTCCATCAATTTAGTCATCTCCGTTTATTTAGCCGTAGGAACAAAAATAAAATAACGTCATCACCCAAGGTTATCCGAAAAGTGAAACTTGTATCATTTTACCTTTCTTTGGAGATTGCAGGATTTAATGTAAGAACGATACAGTGCAGTAACACAAGTTTTACATTTTGGTAGATTTTGGGTGATGATTAATACATTTTTTTATTGTCAAATCATCAGTCGCACTGCATTAATTATTATCATTTTCAAGCATATTATAAGTAGGGGGCAAGTTGGCTAATTTCAACAGGCTAAATTGAAACAAAAATATTATGAGGTTATTACAAGGAGTATCCACATTTGAAACAAAAACCCAGTTACCCAGTACCGACATGAACTTTTGATTTGAAATTAAAATGCTATCGTGAGTTAAAGGGAAATTGGAAATTGCATGATTATGATTATTATCATCTTCTATATGATATTGATCAGGCTACTTGTGTCGATCATCTTAAACTCAATTATGATTGTAAAAAACCAAGTAATTTAAGAAATCCAGCGGTGGAAACAAAAATAAATAAATAACATCATCACCCAAGGTTTGCTGAAAAGTGAAACTCGTATCATTGTACCTATCTTTGGAGATTGCAGGATTTAATGTAAGAACTTAATGTAAGAACGAGACATTGCGATAATACAAGTTTGACATGTTGGTAGATTTTGGGTGACGATTAATACATTTTTTTATTGTCAAATCATCACTACATCAATTATTATCATTTTCAAGCATATTATAAGTAAAGTATGAGGTCGATTTCAACCTCAAATATAACTCAATGAGATGCAACAGCTAAAGTATATCATGTCAAGTGCTGGGGTGTTTTCGATTGCCGCTCCCTATAGAAGAAGCATTCGTGATTTCTATCAAGTTTAAGATAAACCTAAATAGAGCCAAAAATAACATTCTTTCTAAGTTTGATCATTGAATCTTTTCTAAAAAAAAATACCAATTATATATTTTTAAATGAAAAATAATATTTCATGTGATAACATTGAAAAACTTTGATTATGATGAAAAAGCTGTTGAAATTGAATCCATTGATGGAAAATTGTCGATATGTTGCAGTGATTCATTCAAGAAAAATAATCAGATGGTGACAATGTTCGAATAACAGTTTCTTGCCTTTGAATTTTTCGTATTTCTTTTCATGTCACGACGTAACATAATACGCTGAAGTATTTAATCATAAAACGGGGCGCTGCATTAATTTTTTTTGTTACTGAGTACTTTAGCAACATCAAGCGTTGTTAAATACTTCATCTGTCTAAAATTTTCTGTGATATTAAGGCATGGTAGAAATTTCTTTACTATTTTTTCATGTTACTTTAGATTTTATGGTGTTCCTTCAACAAGTTACAAAATCAGACCCCCCCCCCCTCCCCCCCCTCCAAAAAAAACCCACTACACAAAAAAACCGCACACCGCACAAATCTTTTTGCCCCCTTGAGCAAATAATTGTATGATATCCCTTTAGTAAAATCTGCATGTGATCTAGTTTAAATGTGCATCTTGAAGTTTGAGCTTTTAAACACTATTTGATCAGCTCTTCCGACATTTATGATCCATAAACATAAAAAAATTGGATTTATTTTTTGTTTAGCTAAAAAGATTTTTTTTGTTCATACATAAGATCGTTGTTTGCATAGACAAAATAGTCATTTTTGAGCTTGTGATTTGAAATGGCACTAACACTCCTTTGAACTTTGGTTTGATCTTTAGTCATATGTCCTATTATATTTGCTAGAGTATACATGAATAACATACCTTCTTCTTTGCATGTTTTATGCTCATGAACAGTCCAGTTTTTTTTAAGCAAAGATAGTATAGTTGACTCACCTGCCTAGGCCAAGTTCGCCAATAAACTTAATAATAGTACGTAAATAGTTGCACAGTTGTTGCTGACATGTATATTTTGCAGTGGTTAATGTTCTGATATTAAATTATGTGTTATTTCTGATATCAATATTAAATTATGGATCAAGAACATCGATTTACATTTTGTTTCTATTTTTGCGTAGGAGGTGGAAGATCGATCCAGTAGAGAGCATGATTATGTTGGGAGGGTATAGAGAAGGAACAAGATTTGGTAAGTAATTTGCATTATGAATGCTACTTGCGATAAAATTTTAACAACGAATTCGCTGAAACTATGGATTTCATTTGCTGTCTTTTGGTCAAACTGAAACTGTTGTTGTATTTACATTTTGCTGTTGTAAATTTCATCTACTGTTTTATGTGCAGGTTTTGGGAAGAACATGCTAGTGAATTGTGAAGAAATAACCGTTGGTTTGTAGTATGTTGAATTCTTAGGACCATGTTCACTCGAACAAAATATTTACTTTATTGATAAAATATGTTTTAGACTATTATATTTGAGGGAGTATGTTTGGAATACGGTTCAGGACTTCGTTCCATGCTACAGTTCTTGTGTGATATACTGTGGTTTTGGTGTTATCTAATGCCGGTTTCTATGTTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_020268792.1	1.3e-43	paired amphipathic helix protein Sin3-like 4
Swissprot	O48686.3	8.3e-40	Transcriptional corepressor Sin3
trEMBL	A0A803LKS1	1.6e-43	HDAC_interact domain-containing protein

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT1G24190.1	46.70	2e-41	165	ATSIN3;SIN3;SNL3	SIN3-like 3

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G02960	AT1G24190.2	197	90	3	9	190	4	200	46.70	2e-41	165
AfisC6G02960	AT1G24190.1	197	90	3	9	190	4	200	46.70	2e-41	165
AfisC6G02960	AT3G01320.1	166	74	1	11	170	49	214	51.81	6e-41	163

Ortholog group

Species	Genes
Allium cepa	g329239.t1
Allium fistulosum	AfisC6G02960
Allium sativum	Asa8G01756.1
Arabidopsis thaliana	AT1G24200.1; AT1G24210.1; AT1G24230.1; AT1G70030.1; AT5G15040.1
Oryza sativa	LOC_Os08g25200.1

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF02671.18	PAH	Repeat	36	80	54.6	8.2e-15
PF02671.18	PAH	Repeat	116	159	47.5	1.3e-12

Gene Ontology

Accession	Ontology	Name
GO:0000122	P	negative regulation of transcription from RNA polymerase II promoter
GO:0000976	F	transcription regulatory region sequence-specific DNA binding
GO:0001102	F	RNA polymerase II activating transcription factor binding
GO:0001106	F	RNA polymerase II transcription corepressor activity
GO:0001708	P	cell fate specification
GO:0002218	P	activation of innate immune response
GO:0002230	P	positive regulation of defense response to virus by host
GO:0004407	F	histone deacetylase activity
GO:0005737	C	cytoplasm
GO:0009792	P	embryo development ending in birth or egg hatching
GO:0010243	P	response to organonitrogen compound
GO:0016575	P	histone deacetylation
GO:0016580	C	Sin3 complex
GO:0033554	P	cellular response to stress
GO:0031937	P	positive regulation of chromatin silencing
GO:0040011	P	locomotion
GO:0040025	P	vulval development
GO:0042754	P	negative regulation of circadian rhythm
GO:0043234	C	protein complex
GO:0044255	P	cellular lipid metabolic process
GO:0044877	F	macromolecular complex binding
GO:0045138	P	nematode male tail tip morphogenesis
GO:0045171	C	intercellular bridge
GO:0045944	P	positive regulation of transcription from RNA polymerase II promoter
GO:0065008	P	regulation of biological quality
GO:0071310	P	cellular response to organic substance
GO:1900181	P	negative regulation of protein localization to nucleus
GO:1901675	P	negative regulation of histone H3-K27 acetylation
GO:1901701	P	cellular response to oxygen-containing compound
GO:2000678	P	negative regulation of transcription regulatory region DNA binding

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network