result

Gene information

Detail information of AfisC6G03131

Location

Gene	Chr	Start	End	Strand
AfisC6G03131	chr6	556332607	556334808	+

Sequences

CDS

Protein

Gene

>AfisC6G03131
ATGGCAGATAATTTCGAGGAACATTTCAATGATTCGGGTTTCGGATGCACGAGCTTAACCAGAGTTTCATCTCCAGAGAACCTCTTTAGCATCTTCGAAAGTATAGAGAATGAAACCATGAACATTGCGCCTTTCTCGGCATTTGACGATGCACTCTTTAGCCCTAAAGAGATGATGGGTGAGAACAAGTCCTTGTCATCGCAAGTATCCGAACGTTCCAAAGCAAGACGCCATGAACTTGACTATGAGGATGATGCCTTTTTATCTAAGAAGAAGTCTAAGGTTTCACCTACCAATGAAGAAGTTGTAGTAGATGGACAACACAAGGTATCACACATAGCAGTGGAGCGGAATAGGAGGAAGCAAATGAACGAGCATTTGACCGTGCTTCGATCTTTGATGCCATGCTTCTACGTCAAAAGGGTAATCCATTAAATTTACGTACTATTTGCGTTAGTGTTCTTTTATTCTGTTTTTGAATATGAGTAGGGATTATAAGAAGTTGCATTCAATGGTTGAAGATGTTTAGTATATGTAGCAAGTACATGAATTGTTGATTCTCACTTTATACGACATATTTAAGAAGCACTCTACTTTATTTGACCTTTCATCTTTACGCTGTACTACTACTTCACTAGACTTACTTTTATTTTATTTTCATCACGCAACCACAACGACTAGTCTCAATACATATTCTCCTGTTCGGGATCTCAATGACTAAGGATTCATCCCATATAGTGTAGTTGGAAAGATTACACCGTTCTAATGCACATATATAACATACATACTATTATTATTCTGTACATGATACATTGGCTATAATAATGTAATTCAAACAACTTTGACAGTGCATACCTTTAGTGTTTTATCATTGTTACCGGTGACTTGGATGGAATATATTTATGCATTGCATGGTACTTATGTCTGTTGTATCATACACAAGATCGGTTGAATATAGGGGTAATATATAGTTAGATCTTAGAAGTACACTTTAAAGCAATATGTTCGTTCATATGGGTTCTTAATTACCAAACCATTAGCTATGCCCTACCCGTATGATCTTTAAATTAATATAGCAAGTTCAAGTATATTTTTTCAAAGTCTGAAAATAATGATAATAGGGAGATCAAGCATCGATAATAGGAGGAGTAGTTGACTACATCAAAGAACTGCAACAAGTACTGCAATCACTAGAAGCCAAGAAACAAAGAAAAGTGTACAATGAAGTGCTCAGCCCTAGGCCTCTCATTTCCAGCCCCAGGCCTCTCATTTCCAGCCCTAGACCACCACCACATAGCCCAAGAGTGAATTTACCAATAAGCCCTCGGACTCCTCAATCAGGAAGCCCATACAAGCCTAGGATGCAAAACCCTAACTGCATCAACATCATTACCCCTTCATCTCATGAATCCTCTCCAAAATCGTTAGACTCGTCCACTGATCAACTTGCAGTGAACTCCACATCTTCGGTTGCAGATGTCGAAGTTAAGTTTTCAGGTCCAAACGTGTTGTTAAACACGGTGTCGAGCAGAATCCCAGGTCAAACTTTGAAGATAGTAAGTGCACTTGAAGGACATGCCCTTGAAATACTTCAAGTTAACATTAACTCTACTGATGATGCTATGCTCAATTCTTTTACTATCAAGGTAAAGTACTATATTTTCTACCTTTTATGTTTAAATTTGGAAGTTGCTATGGGTAAAAAGATGTAAGAAATCTGGAATGCTTTGCTTCAAAATAGAAAAATAAAAGAATATGTAACAGGACCCTGCAAGAATTGAATGATAACCAAAGTGCATTTAATGGTACATTAAATAAAGTTTGGGGGGAACTAAGATAAATAGCTCACACTTTTGTTGTGTAGCTCAGAATTGTCATTTATTTGCATTTAATTTGAAACCTTCATTGATGCCTCACCATCCATTGAATACAGGATCTAAACTTAACTACATGATATTAATGTTGAAATCATTAAATTCCTGCATGCAGCACTATCTATCCATGAAACTGTGTATCATGAAACAACAATCTGAGTACAAATATATGTATTTTTTGAATCCACACATTTTTACCATTTTACTGTACATATATATGTTTATATAGAAATCTGCATTTATACAGATTGGAATTGAATGCGAGTTAAGCGCTGAAGAGCTAGCGCAGGAGGTACTGCAGACATTTTCTGAAAGATCAGCACAGTAA

Functional annotation

Database	accession number	e-value	annotation
nr	XP_008783959.1	1.3e-83	transcription factor SPEECHLESS
Swissprot	Q700C7.1	2.5e-63	bHLH transcription factor bHLH098
trEMBL	A0A8B7BRU8	9.3e-84	transcription factor SPEECHLESS

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT5G53210.1	50.28	1e-74	276	SPCH	basic helix-loop-helix (bHLH) DNA-binding superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	gap openings	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G03131	AT5G53210.1	354	121	8	26	336	22	363	50.28	1e-74	276
AfisC6G03131	AT3G06120.1	229	91	4	110	336	1	192	43.23	9e-44	174
AfisC6G03131	AT3G24140.1	248	127	2	90	337	180	394	35.48	2e-37	153

Ortholog group

Species	Genes
Allium cepa	g97309.t1
Allium fistulosum	AfisC6G03131
Allium sativum	Asa8G03761.1
Arabidopsis thaliana	AT5G53210.1
Oryza sativa	LOC_Os06g33450.1; LOC_Os06g33450.2

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00010.23	HLH	Domain	109	159	41.7	7.4e-11

Gene Ontology

Accession	Ontology	Name
GO:0003677	F	DNA binding
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0046983	F	protein dimerization activity
GO:0009913	P	epidermal cell differentiation
GO:0010052	P	guard cell differentiation
GO:0016597	F	amino acid binding
GO:0048522	P	positive regulation of cellular process
GO:0048523	P	negative regulation of cellular process

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
K20558	SPCH; transcription factor SPEECHLESS	EC:-	MAPK signaling pathway - plant	ko04016

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network