Detail information of AfisC6G03190


Location
GeneChrStartEndStrand
AfisC6G03190chr6574480432574504692-



Sequences
CDS
Protein
Gene

Functional annotation
Databaseaccession numbere-valueannotation
nrXP_020268925.13.6e-144uncharacterized protein LOC109844343
SwissprotQ8L548.12.2e-42Protein TSO1-like 1
trEMBLA0A5P1EKJ52.6e-144CRC domain-containing protein

Best hit in Arabidopsis
TAIR id% identitye-valuebit
score
gene aliasesShort description
AT3G22760.144.763e-50 197SOL1Tesmin/TSO1-like CXC domain-containing protein

>>>Show top 3 blast result


Ortholog group
SpeciesGenes
Allium cepag81390.t1
Allium fistulosumAfisC6G03190
Allium sativumAsa8G03724.1
Arabidopsis thaliana
Oryza sativa

Pfam domain
Pfam IDPfam nametypealignment_startalignment_endbit_scoreEvalue
PF03638.12TCRDomain53056747.21.7e-12
PF03638.12TCRDomain61765345.18.4e-12

Gene Ontology
AccessionOntologyName
GO:0000122Pnegative regulation of transcription from RNA polymerase II promoter
GO:0005515Fprotein binding
GO:0000794Ccondensed nuclear chromosome
GO:0000785Cchromatin
GO:0001046Fcore promoter sequence-specific DNA binding
GO:0003700Ftranscription factor activity, sequence-specific DNA binding
GO:0016020Cmembrane
GO:0004180Fcarboxypeptidase activity
GO:0046872Fmetal ion binding
GO:0005737Ccytoplasm
GO:0005700Cpolytene chromosome
GO:0008340Pdetermination of adult lifespan
GO:0009934Pregulation of meristem structural organization
GO:0030317Psperm motility
GO:0030849Cautosome
GO:0031523CMyb complex
GO:0048444Pfloral organ morphogenesis
GO:0048477Poogenesis
GO:0051302Pregulation of cell division
GO:0070176CDRM complex
GO:2000026Pregulation of multicellular organismal development

KEGG pathway
KONameEnzyme IDPathwayPathway ID
K21776LIN54; protein lin-54EC:- Cellular senescenceko04218

Expression pattern in different tissues

Expression pattern in BioProjects

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Co-expression network

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