result

Gene information

Detail information of AfisC6G03313

Location

Gene	Chr	Start	End	Strand
AfisC6G03313	chr6	599021798	599023201	-

Sequences

CDS

Protein

Gene

>AfisC6G03313
ATGGAAAGGTTTCTGCAGCTAAAGTCAGTTAGAGAATCTCTAGGGTTAGGAGATATTGAATTCGATATTTGTAGTTCAACTGTATATGATACGATGGTAGAGGATTGGATGAGAAATTTGGAAGTTGGGATTCCATGCTTGCTAGAGGATGGTATTAAGATGCCCTTTTTAAAACCAATTCCGTGATTCAACGCATTATATTGTTCTGTTAAAATGACCGACACTAGCTCTCATGTTAGCAGATGCTCCATTGTATTGTTCGGTTGACAGCAACAATGAAGCATTCACTCAATACATTATACAAATACTTGATACTTTTCTTTTTTCCATATAAGTGAGGTTATGCTATCTTAGTCCTTTTCCTGATTCGTTGTCAACATAGTTACTTGATATATCTATGTGTTGAAGAAGAGGTGAGCAATCAAATATAATATACTTCACTATATATACCCTTATTTTTATAACCTGTTGTTCATTATGAAATTTATTTTATAGGAAACGCCTGCAAATCAAAATGAATTGGCTCAGTCAGCTGATGCTAAGATCAGATTGAAATGGACTCGACAACTACATGAATGTTTTGTTAATGCAGTTTCACATCTTGGAGGACCATACGGTGAGTTCTAATTTACATAACTTTGAAATCAGTTTGTAAATATTTGAGTATATATAGCGTTCATACATTTCTGAGAATCCCAGAGGCCACTCCAGAAACAGTGTTGAGAGAAATGGTAAGTCCTGGAATAACCCTCAACCATTTGAAAAGCCATTTGCAGGTATTATTATGTTTGTGTTGCGTTTAAATAGATTGATGGGTATTAAGAGAATAACAATTTTGTTGGGTGATCACAAATGATTTATGTAGAGGTATTAAAGCAAAACAGCCCAACTCTACCATTCGTAAATGTGCTAGAGTTCAGTTGATCAAGAATGGAAAGAAGATTGCTGCCTTTGTGCCAAACGATGGTTGCTTAAACTACATCGAGGAAAATGCAAGTCTTTTCACTACTAATAGTTAAGATGACTAGTTGCGAAAACCATAACTTACAGTAAGGCATTCGACAGTACCTTATGCTATTAATCATTGCTTTGCTTTACACCTAATTAGTATTTTGGCAATGCTTTGCTGTGTATTTTTTTTGCAAAATATATCTTTTGGAAGTTTTTTAAGATAAAAAATATCCCAGCAAGGTAATAGTTTGGAATTTGAACTGTAAAATTAAAATGACATAAGATAAAATCTGTCATGTCTTTAGATTTTTTAATCTAATCTAACTTTTTTGTTTGATTATGATAATTTCCTGTAACTTATCTAAATTGTTGAACAGCATACAGGATGAAGTTTTGATTGTTGGATTTGGTAGTAAAGGACATGCTGTTGGAGATATCCCTGGAGAAGCCTAG

Functional annotation

Database	accession number	e-value	annotation
nr	XP_008783889.1	5.0e-14	myb-related protein 2-like isoform X2
Swissprot	Q8VYI2.1	8.2e-14	Protein PHR1-LIKE 12
trEMBL	A0A8K0N1X4	3.6e-14	Myb family transcription factor PHL8

Best hit in Arabidopsis

TAIR id	% identity	e-value	bit score	gene aliases	Short description
AT3G12730.1	60.34	3e-15	77.0		Homeodomain-like superfamily protein

>>>Show top 3 blast result

Query id	Subject id	alignment length	mis matches	query start	query end	subject start	subject end	% identity	e-value	bit score
AfisC6G03313	AT3G12730.1	58	23	41	98	16	73	60.34	3e-15	77.0
AfisC6G03313	AT4G13640.1	58	24	41	98	30	87	58.62	1e-14	75.1
AfisC6G03313	AT3G24120.1	58	24	41	98	34	91	58.62	1e-14	75.1

Ortholog group

Species	Genes
-	-

Pfam domain

Pfam ID	Pfam name	type	alignment_start	alignment_end	bit_score	Evalue
PF00249.28	Myb_DNA-binding	Domain	50	99	26.3	5.6e-06

Gene Ontology

Accession	Ontology	Name
GO:0005515	F	protein binding
GO:0000719	P	photoreactive repair
GO:0003700	F	transcription factor activity, sequence-specific DNA binding
GO:0003904	F	deoxyribodipyrimidine photo-lyase activity
GO:0005634	C	nucleus
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007623	P	circadian rhythm
GO:0009536	C	plastid
GO:0009555	P	pollen development
GO:0009567	P	double fertilization forming a zygote and endosperm
GO:0009650	P	UV protection
GO:0010628	P	positive regulation of gene expression
GO:0016036	P	cellular response to phosphate starvation
GO:0043565	F	sequence-specific DNA binding
GO:0055063	P	sulfate ion homeostasis
GO:0071486	P	cellular response to high light intensity

KEGG pathway

KO	Name	Enzyme ID	Pathway	Pathway ID
-	-	-	-	-

Expression pattern in different tissues

Expression pattern in BioProjects

Co-expression network